FMO04867.5prime Sequence
934 bp (934 high quality bases) assembled on 2008-08-08
> FMO04867.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATTCCCT
TAACAACGGATGGTTCAGCGAACTGCAGGCCGATCTCTGGCCCGGTCAGT
CATTCTCCCTGAAAGTCAAGGAGGTCATCCACAAGGAGAAGTCCCGGTTC
CAAGACATCCAGATCGTTGAAACCGAAACCTATGGACGGTGCCTAATTCT
GGACGGAATCATTCAGTGCACGGCCAGGGATGAGTTCTCGTACCAGGAGA
TGATATCTTTCCTGCCGCTCTGCGCCCATCCCAATCCCAAAAAGGTCCTG
ATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGCGAGGTGGTAAAGCATCC
ACTGGTCGAGGAAGTGCATCAGGTGGAAATCGACGACCGTGTCGTCGAGC
TGTCCAAGCAATATCTCCCAGCGATGGCCTGTGGTTTCGCCAACGAGAAG
TTGAAGCTTACCATTGGCGATGGATTCGACTATATGAAGAAACACAAGAA
CGAATTTGATGTCATCATCACCGACAGCTCGGATCCCATTGGTCCGGCAG
TGAGCCTGTTTCAGGAAAGCTACTACGAGCTAATGAAACACGCGCTGAAG
GATGACGGAATCGTGTGCTCCCAGGGCGGTAGCTTCTGGCTGGACCTGGA
CTACATCAAGAAGACCATGTCCGGCTGCAAGGAGCACTTTGCTAAGGTGG
CCTATGCCGTCACCTCCGTTCCGTCCTATCCCTGCGGCCACATTGGCTTC
GTCATGGGCTCCCTGAACAAAAACCAGGACTTCGCTACTCCCAAGCTTGG
GAAAGTCCGAAATCGATTCTATAGACCTAAGGTACTACTCCTCCGAGGTT
CACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGCAGAAGCACTTTTACGA
AGCAAGCTTTCTAGACCATTCGTTTGGGGGCGCG
FMO04867.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SpdS-RC | 995 | CG8327-RC | 51..911 | 40..901 | 4285 | 99.9 | Plus |
| SpdS-RA | 1511 | CG8327-RA | 81..941 | 40..901 | 4285 | 99.9 | Plus |
| SpdS-RB | 1189 | CG8327-RB | 379..1105 | 174..901 | 3615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9632377..9633103 | 174..901 | 3590 | 99.9 | Plus |
| 3R | 32079331 | 3R | 9631721..9631854 | 40..173 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:10 has no hits.
FMO04867.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:41 Download gff for
FMO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SpdS-RA | 81..951 | 40..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:55 Download gff for
FMO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SpdS-RA | 63..933 | 40..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:49 Download gff for
FMO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SpdS-RA | 81..951 | 40..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:49 Download gff for
FMO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9631721..9631854 | 40..173 | 100 | -> | Plus |
| 3R | 9632377..9633113 | 174..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:41 Download gff for
FMO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5457443..5457576 | 40..173 | 100 | -> | Plus |
| arm_3R | 5458099..5458835 | 174..909 | 99 | | Plus |
