FMO04868.5prime Sequence
877 bp (303 high quality bases) assembled on 2008-08-08
> FMO04868.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAGCAACGA
TGGATACGGACCATGCGAACCTAAATGACTTCAGGGATCGCGATCTGGCC
ACGCGCATGCGCCGCTGCAATTACGAAAAATACAAATCCTTGGTGCGCAT
GCACCTATCGTTTGAATTGGAGCTCAATACGGATGAATTCGATCTCCCCT
GTCACGAGATTGTCTACGAGGACAAGGGCAAGCTGAAGAAGTGGAACCGC
CTGTCTAAAAAACATCGTTTGGGACATGGAGCAGCTGCCACTTCCTGTGC
CCCCGGGTCCGCCGTAAATCCCGGGGGAAATAGTCCCCCCAAAAACCTGC
AACAGCCGAATGTTCCGGGATTTCTTATTGCATCGGCAAAGACCAAGGAA
TTTCCTATGGGTGGAAAAAAACCCCCCCGGAAGGGCTTTCCCCAGGGGGG
GGGGGGGGCCCCAAAAAAAAATTTTGGGGGATTTACAAAAAAAAACTGAA
TTTGGAATTGGGGTTTCCCCCCCCAATGGGCACCGTTTTAAAGTTTTTTT
CCAAAATTCAAAACCGGTTTAGGGGCCCCCATCGGGGGCTTTGAAAAACC
CCCCCCCCCGGCCTTGGGGAAAAAAACCCCTGGGGAGAAAAAAAATTTCT
CCCCCGGGGGGGTTTTTCCTCCCCCGAAAAAAAGGGTTTTCCCCCCATTA
GGGGGGGGGGGGCAGAAAAAAAAAAAAAAGAAAATGTGCTTCTCCCCCCC
TCTTTTAGGAGCGCCGCGGTGCGCGCAAAAAAAAGACCATTATTTTATTG
TGGCGCGGGGGGCTCACCCCTCTCTCTCTAAAAAAAAAGAAAGAAAGAAT
TCTTATAGTCCTGCTCGCGCGACACAC
FMO04868.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-RC | 3595 | CG6477-RC | 334..685 | 37..389 | 1455 | 94.9 | Plus |
| RhoGAP54D-RA | 3791 | CG6477-RA | 530..881 | 37..389 | 1455 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17590206..17590355 | 186..37 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 17589939..17590140 | 389..187 | 650 | 89.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:30:42 has no hits.
FMO04868.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:47 Download gff for
FMO04868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 523..794 | 30..301 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:33 Download gff for
FMO04868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 521..792 | 30..301 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:40 Download gff for
FMO04868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 523..794 | 30..301 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:40 Download gff for
FMO04868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17590026..17590140 | 187..301 | 99 | <- | Minus |
| 2R | 17590206..17590362 | 30..186 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:47 Download gff for
FMO04868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13477531..13477645 | 187..301 | 99 | <- | Minus |
| arm_2R | 13477711..13477867 | 30..186 | 98 | | Minus |
