FMO04870.5prime Sequence
873 bp (873 high quality bases) assembled on 2008-08-08
> FMO04870.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACTCGGC
AATCAAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGAC
TGGGCGATCTAACCATGCAGCTGCATCCCAATGCGGAGTCGCCATCGGGT
TCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCAT
TCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACGC
TGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGCCACCTCCTCAAGTA
TTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTGGTGGCGCAGCCAAA
GCAGATCATCCTGCATCCACAGTCTAATACAACTACGACGGGCACGACGG
TGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTGCGGCATTAGCGGCA
GCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCCACCATCACGGAGAA
CATCATTATCCAGCAGCCCACTTCGACTACGGCGACAGTGGTGCAGCAGC
CACATATGGTGTCCACCTGCTCGTCGACGCAGATCGTGGTGCCCGTTGTG
TCGGCAGTGTCCACTGTTCCAACAGTACTCTCGCCCACGGTGGTGATTGC
CGACGATGTGGTTAGCACCTCCAATCCTCCAGCGGCAGCGGCGACAGTAG
GATCGCCAGCAGGGGCGCCAGCAGGCTTAAAGTGCGGACCAGACGTGTCC
ATGACCCTCAATCGCATCAATGTCCAGGAGAACGAGGTGGACGTGGAGGA
GTGCCTGCCCGCAGAGGTGGTCAAGCTGGATTTTGTCAGCGAGGAGGTGG
CCGGGGCAAGCTTTCTAGACCAT
FMO04870.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33695-RC | 1430 | CG33695-RC | 92..908 | 39..855 | 4085 | 100 | Plus |
| CG33695-RD | 1300 | CG33695-RD | 114..913 | 56..855 | 4000 | 100 | Plus |
| CG33695-RE | 1394 | CG33695-RE | 302..1007 | 150..855 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11278754..11279460 | 149..855 | 3535 | 100 | Plus |
| 2L | 23513712 | 2L | 11278392..11278485 | 56..149 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 224..530 | 198 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 223..353 | 169 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 249..467 | 163 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 223..286 | 140 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 223..289 | 137 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2860 | 223..296 | 136 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 244..554 | 135 | 54 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 186..286 | 132 | 60.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 186..286 | 132 | 60.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 244..285 | 129 | 78.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 223..299 | 126 | 64.1 | Plus |
FMO04870.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:15 Download gff for
FMO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RC | 88..915 | 33..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:02 Download gff for
FMO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RC | 86..913 | 33..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:12 Download gff for
FMO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RC | 88..915 | 33..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:12 Download gff for
FMO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11278394..11278485 | 58..149 | 100 | -> | Plus |
| 2L | 11278755..11279467 | 150..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:15 Download gff for
FMO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11278394..11278485 | 58..149 | 100 | -> | Plus |
| arm_2L | 11278755..11279467 | 150..863 | 99 | | Plus |
