FMO04871.5prime Sequence
1204 bp (1042 high quality bases) assembled on 2008-08-08
> FMO04871.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATAAAAGCGT
ATATAATTTTGGTGCCTTTGCTGCAGTCAATTCTTTTGATTGGCTCCCTT
GAAGCGGGCTGTCCTGTTTACCTAACCATTTCGCTGACGGGCAAAACCCT
GCAGGACACCTTTCTCGAGATCAACTGGGGCCCGAACTGCTATGGACCAC
CCGAGTGGGTGGGTATCTACAGCCAGGATCCGGCCATCTCCAACTTTCAG
CCAGATCTGCGCATCAATGGTATTTTCAATATAACCGGCAAAATGCAGAC
GCCCATCAAGCTGGGCAAGCTTCGTTTTCCCGGTGGCTGGAACAAAAAAG
ATAGTAGCGATCAGCCGGCAACGCAATATCTCAAGGGCAAGTGCCTGCCA
CACTATGTGGCCAGCTACAATGGCACCGAGCTGCTCACGGTGGATTGCCT
TAAGATACAGCCCAATTGGATGGGCCAGATCAAGGACATCAATCGAATGG
CGCTGAAGGATATCTTCCTGCCCGGCACACATGCCTCGGCGGCCGTCTTG
GGCAGCTCCAGTAAGTCCAATTCGATACTGGTCAGGGATTACCTGGTGGC
CCAGCAGCTCGATGTTTGGTCGCAGCTAGTCTTTGGCATACGTTATCTCG
ATTTAAGCATTGGATACAAGAACATGAACACCGAGAATGATGCCGATAAT
TTCTGGATAGCCAACGAGAATATGCTGATTACACCGCTACTCACAGTTCT
ACGTGATGTTCGTCAGTTTGTTAAAAGATCTGGCGAAGTGGTAGTCCTGG
ATTTTAGTAGTTTTCCCATCGGCTTTTACAAGCATCCAGAGATCTACAGC
TCGCTATTCCGGCTAATTCGCCAGGAGCTGGGCGATGAGACCTATCGGCG
TAATGTGGCAAGGACGAAAACTGTGCGAATCGAATTTCAGCGAAATACTG
CTTCAAAGAGGCATCTGGTGATATTATTTCCCACGCAGAGCTGCCCTATC
CGGACAGAGAATCGAACATGCTCTGCCCGCGTGCAGCGTTTTAGCCACCA
GCTTATGATATTCTCAACTCTGGACTAATATGGCGTCTGTTGTCAGCAGA
GCGGAATCTCCAGTTTCGGATGTGAATGATTCACGGGCGGTGAGGAAATG
GACGACTGACGCCACCAATGCGACACGGCCCAAGGACCGCGCGGTCTCTT
AATT
FMO04871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5895-RA | 1512 | CG5895-RA | 86..1208 | 38..1146 | 5040 | 97.7 | Plus |
| CG5895-RC | 1415 | CG5895-RC | 54..1111 | 103..1146 | 4715 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16035731..16036291 | 103..663 | 2805 | 100 | Plus |
| 3L | 28110227 | 3L | 16036351..16036701 | 663..1009 | 1555 | 98.9 | Plus |
| 3L | 28110227 | 3L | 16035570..16035636 | 38..104 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:39 has no hits.
FMO04871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:31 Download gff for
FMO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5895-RA | 83..1164 | 35..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:54 Download gff for
FMO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5895-RA | 81..1162 | 35..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:55 Download gff for
FMO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5895-RA | 83..1164 | 35..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:55 Download gff for
FMO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16035567..16035636 | 35..104 | 98 | -> | Plus |
| 3L | 16035733..16036291 | 105..663 | 100 | -> | Plus |
| 3L | 16036352..16036701 | 664..1009 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:31 Download gff for
FMO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16028667..16028736 | 35..104 | 98 | -> | Plus |
| arm_3L | 16028833..16029391 | 105..663 | 100 | -> | Plus |
| arm_3L | 16029452..16029801 | 664..1009 | 98 | -> | Plus |
