FMO04872.5prime Sequence
511 bp (511 high quality bases) assembled on 2008-08-08
> FMO04872.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAGCCCCG
TGGAACTGCTAAGCCTCTCCAATCCCGTCTTCAAGAGTTTCACCTTTTGG
GTCGGAGTTTTGGTGATCAAAATGCTGCTGATGAGCCTTCTGACAGCCAT
CCAGCGTTTCAAGACGAAGACCTTCGCCAACCCCGAGGACCTGATGTCCC
CCAAGCTGAAGGTCAAGTTCGACGATCCGAACGTGGAGCGTGTGCGCCGT
GCCCACCGCAACGACCTGGAGAACATCCTGCCCTTCTTCGCCATCGGTCT
GCTCTACGTCCTGACTGATCCGGCCGCCTTTCTGGCCATCAACCTGTTCC
GCGCCGTGGGCATCGCCCGCATCGTCCACACACTGGTCTACGCCGTGGTC
GTGGTGCCCCAGCCTTCCCGTGCCCTCGCCTTCTTCGTGGCCTTGGGCGC
CACCGTCTACATGGCCCTGCAGGTCATCGCCTCGGCCGCCTTCGCAAGCT
TTCTAGACCAT
FMO04872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgstl-RA | 660 | CG1742-RA | 101..556 | 38..493 | 2280 | 100 | Plus |
| Mgstl-RC | 951 | CG1742-RC | 524..847 | 170..493 | 1620 | 100 | Plus |
| Mgstl-RB | 591 | CG1742-RB | 164..487 | 170..493 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22226213..22226668 | 38..493 | 2040 | 96.5 | Plus |
| X | 23542271 | X | 21043678..21044003 | 168..493 | 1630 | 100 | Plus |
| X | 23542271 | X | 21043170..21043301 | 38..169 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:31:45 has no hits.
FMO04872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:47 Download gff for
FMO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 95..561 | 30..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:24:03 Download gff for
FMO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 93..559 | 30..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:31 Download gff for
FMO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 95..561 | 30..499 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:31 Download gff for
FMO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22226207..22226674 | 30..499 | 94 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:47 Download gff for
FMO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22226207..22226674 | 30..499 | 94 | <- | Plus |
