FMO04873.5prime Sequence
1226 bp (1006 high quality bases) assembled on 2008-08-08
> FMO04873.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCAACATCA
CTTTACCCAACACTGAGGAGCGTGTGAACCTCTTAAAATCGCGCATCAAC
AGGCTGGGTGACATTACGGTGGCCGGCGATGTTTGCGCACGCGAAATTGC
AATGAAAACCAAAAATTTCACGGAGGACGAGCTGTGCCAACTGGTCCGAG
AAGCCCTCCATGAAGCCATTGTCCGCACTCACGTCACCAGATGCCCGAAG
GGCCTTCAAGTCACTCAGGTCGATCTCCTGGCCGCGGTAAAGATCATTCA
GCCACGATTTGGCCGGCAGGAGGAGACTCTCCAGCTGCTCATGCCATATG
AATATCTAGATCGTACCGCTTTCGATCCGAATGATCTCCTGTCCACCGGA
CGCCCAAGATGGTCTTGCCATCTGGTCAAAGGTAAGCCCAAGTCAGGCCT
AACTACGGTGGCCGCTCAAATGGCTTTGAAAACAGACTGCCCTTTTATAA
AATACATCTCGTCGGCCGAATTGCTGGGACTTAGCGATTCCGAAAAATGC
CAGAGAATACGGGAAGTCTTGGAGGACGCCTATGTTTCCAGGCGCAGCTG
CGTCATCATTGACGACTTTGAGCGTGTCATTGGTTACGGCGCCCTGGGTA
AGCGGTACTCCAAGGAGTTCCTGCAGAAGCTGACGGTTCTTCTGAAGAAA
CAACCGCCCAACAGCCACGAGCTCATCATCATTTGCACAAGCAATCGTCT
CGATGTCCTGGAGGAACTGGGCTTGCTATCCGTTTTCACTTCAGTTCACA
ATGTGCCAAATGTTTCCACGCCTAAAGAACTTATGGTCATAGTGGAAGCT
TCAAAACGATTCGAGCCCGAGGAGCTACGCCAAATCGAGATCGCCATGGA
TGGCCGCAACGTCTCATTGGCATCAAACGGTTGCTTGACTTGATTGCGTG
GGGTGAATTCCCTAAATCACGACCGTCGAGCTGCCAAATTGCTGAGAAAT
TGGGCGAGGCAATGGGATGGGTAGGGACATCTAGTCCACTGGTACCTCAT
TAATTGCAGCTTTCAGATCATCGTTTGGCGGCGCGAGCCAAGGTAATGGT
CAATCATATCAATCGTAATCCTAATCCAACTAGCTAGGAATCTTGGGTCT
GACATGCTTGATCCAAATTAGATGCTCCGTGTGGTCAACGTGATGCGCTT
GCGTGAACATCTCTATGGACTGCTGC
FMO04873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31495-RB | 1500 | CG31495-RB | 136..1151 | 38..1049 | 4885 | 99 | Plus |
| CG31495-RA | 1695 | CG31495-RA | 136..1151 | 38..1049 | 4885 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13838809..13839799 | 1027..38 | 4765 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:56:37 has no hits.
FMO04873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:02 Download gff for
FMO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 132..1158 | 38..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:57 Download gff for
FMO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 132..1158 | 38..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:58 Download gff for
FMO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 136..1162 | 38..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:58 Download gff for
FMO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13838773..13839799 | 38..1059 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:02 Download gff for
FMO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9664495..9665521 | 38..1059 | 98 | | Minus |
