FMO04876.5prime Sequence
1217 bp (423 high quality bases) assembled on 2008-08-08
> FMO04876.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAATCCACATGGCGGACGGAC
GCATAGTGGAAAACGGCAGAGGAGGAGGCGGTGAAGGAGTAGCAGCAGCA
CCATCGCCCAGATACGCGATCCTCGACTGTGATGGGGGTAGCGACGATGC
CTGGGCACTGCTCCTGCTTCTGCTTGCGGCTAAGAGCCATGGGATTCATC
TGCTGGCCATCACCACAATGGGATGCGGCAATACCAGCAGGGAGAATGCG
GCACGCAATATGCAACAGATTCTGGATGCCTGCTAGCGCACAGATATTCC
CATATACCTGGGCGCCGTAAATGCCCTCATTCCCTCTCTGGAGGATGAAA
AAAAGTATTTCCATGGCCGCGACGGATTCGGTGACTGTCTCACCGACGAC
TGCGCTCTTCAGTTGGAGGACATCGTGCAGGCGGAGCACGCAGTGACAGC
CATCCATGATCTCTGCCGTTCCAGGCCCAAACAGATCACCATATTTGCCG
TGGGCCCGCTGACGAATCTTGCCCTGGGCTATACGATGTACGGTCCGGAG
TTTGGGAATAACTTTCGTGATCTGTTCATTATGGGCGGCAACTATCAGGG
CGTGGGCAACTCCTCGCGTTCGGCGGAGTTCAACTTTCACTCGGATCCGG
AGGCGGCGCACACGGTGCTGCTGACGACACGCTGTCCCATCACCATACTG
CCGTGGGAGGCCTGCCTCCCGGAGAGATTCAATATACACATTAACTGGCG
CCTGAAGGATTTCGCCGCAAGGGCCAAGGAAGCCTGACATCCATCAATTA
CCATGCTCAACCAAGTGGAAGCCGCCCAGTGGCTGCCAATGATCGAGCAG
TACGGGATCGATACGTGGAATCATGCGATGCCATTGCCGTGGCCGTTTGG
CCTATTCAAGGATCACTTGATCCGGAGGCACGACACCTGCCACGCCATCA
GTGGATCTGCAGAGCACACAACACTCGCAGCAGATGTCTCGATCATTTGC
GGGAGCGCGAAAAGTATCCGGAGGACTTGCGCAATACGAGCTGGCTGTAT
GTCTAATTCTTGAATTGATCTGCAATGATCCGACTGCATGAATGATGGAA
CCTATCCGAAACCTCAATGCAAGCTTCTAAACATCTCTCGGCGCTGGCGA
AGAATGGCCTAACTAACATTCGAATGCCTATCCCCATGCGGCAGGAAAGC
TCGGACTAGTGATCTAC
FMO04876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12177-RC | 1509 | CG12177-RC | 348..1372 | 38..1061 | 4585 | 96.9 | Plus |
| CG12177-RB | 1210 | CG12177-RB | 49..1073 | 38..1061 | 4585 | 96.9 | Plus |
| CG12177-RA | 1805 | CG12177-RA | 246..1270 | 38..1061 | 4585 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13678855..13679301 | 742..296 | 2205 | 99.6 | Minus |
| X | 23542271 | X | 13679896..13680153 | 295..38 | 1230 | 98.4 | Minus |
| X | 23542271 | X | 13678462..13678753 | 1033..743 | 965 | 93.2 | Minus |
Blast to na_te.dros performed 2014-11-28 19:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS3 | 1790 | BS3 BS3 1790bp | 951..998 | 653..696 | 114 | 75 | Plus |
FMO04876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:29 Download gff for
FMO04876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-RA | 246..1256 | 38..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:09 Download gff for
FMO04876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-RA | 244..1254 | 38..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:14 Download gff for
FMO04876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-RA | 246..1256 | 38..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:14 Download gff for
FMO04876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13678472..13678753 | 743..1023 | 93 | <- | Minus |
| X | 13678855..13679301 | 296..742 | 99 | <- | Minus |
| X | 13679896..13680153 | 38..295 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:29 Download gff for
FMO04876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13572505..13572786 | 743..1023 | 93 | <- | Minus |
| arm_X | 13572888..13573334 | 296..742 | 99 | <- | Minus |
| arm_X | 13573929..13574186 | 38..295 | 98 | | Minus |
