FMO04878.5prime Sequence
1213 bp (1071 high quality bases) assembled on 2008-08-08
> FMO04878.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCATCCTGCCTC
GCCGCATCAGCACCGCGCCCGCCTGCATGTCGGATCGCCAGGATCGGGTG
GCATACAGGCCTCCTCCTCCACGGAGACCTTCCCACTCACTCCGCAGCAC
CAGTCCTCGCAGCACGCCGTTCACATCCCGCCGCCCCCCTCCCTGCCCTA
CCAGGGACTCAAGACCTCTGAAAACGATGACATGGGCTGCGTGGAGATCC
TGGCCACGGTGGTGTCCGTGCTGATCATGGTGCTAACCTTTCCCATCTCG
GTGTTCATCTGCTTCAAGGTGGTCTCCGAGTACGAGCGAGCGGTGATCTT
CCGGATGGGGCGACTGCGCAGCGGCGGAGCCCGTGGTCCCGGGGTCTTCT
TTGTGCTGCCCTGCGTGGACGACTACTATCCGGTGGATCTGCGCACCGTC
TCCTTTGACGTGCCGCCGCAGGAGGTGCTCTCCAAGGACTCGGTTACTGT
GACGGTAGATGCGGTTGTCTACTACCGCATCAGCGATCCCCTCAAGGCGG
TCATCCAGGTGTACAATTACAGCCATTCGACGAGTCTCCTGGCGGCCACC
ACGCTGCGCAATGTGCTCGGCACCAGGAATCTGTCCGAGCTGCTGACCGA
ACGCGAGACCATCTCGCACACCATGCAGATGTCCCTGGACGAGGCCACCG
ATCCCTGGGGCGTTAAGGTGGAGCGCGTGGAGATCAAGGACGTATCCTTG
CCAACTGCCCTCCAGCGGGCGATGGCCGCCGAGGCGGAGCAGCGAGGGAG
GCGCGGGCCAAGGTCATTGCCGCCGAGGGCGAGATGAAGTCGTCGAGGGC
TCTGCGCGAGGCTTCCGAGATCATCTCGGCCAGTCCATCCGCCCTGCAGT
TGCGATACTTGCAAACACTGAGCAGCATTTCAACCGAGAAGATTCGACCA
TCATCTTCCCGCTGCCCATGGAGCTGCTCACGCCCTTCTGATACCCAGCA
CACTCGCAGCAGCTGCACTGCACACAGCAGCAGCTGCACAGCAACAGCAG
CAGCATCAGCACACAACAACAACATCTGCGTCCTGCAGCCACTCATCGAA
CCCGACCAACCACAGGCAGCTTCTAGACATCGTGGCGCGCGGCCAGTATG
GCCTAACTATCTACTAACTATCAACATAGCCTAGGGATCCTGGGCCATGA
ACTATGGCGTTGC
FMO04878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33253-RB | 1733 | CG33253-RB | 125..1217 | 37..1110 | 5010 | 98.3 | Plus |
| CG33253-RA | 1733 | CG33253-RA | 125..1217 | 37..1110 | 5010 | 98.3 | Plus |
| CG33253-RC | 2410 | CG33253-RC | 983..1894 | 218..1110 | 4105 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19185690..19186206 | 218..734 | 2585 | 100 | Plus |
| X | 23542271 | X | 19183545..19183725 | 37..217 | 905 | 100 | Plus |
| X | 23542271 | X | 19186278..19186443 | 735..899 | 780 | 99.4 | Plus |
| X | 23542271 | X | 19189120..19189547 | 304..734 | 650 | 77.3 | Plus |
| X | 23542271 | X | 19186532..19186720 | 898..1076 | 490 | 92.6 | Plus |
| X | 23542271 | X | 19189882..19189964 | 897..978 | 200 | 85.5 | Plus |
| X | 23542271 | X | 19189640..19189805 | 735..899 | 195 | 75.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:39 has no hits.
FMO04878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:30 Download gff for
FMO04878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33253-RA | 125..1198 | 37..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:42 Download gff for
FMO04878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33253-RA | 122..1195 | 37..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:46 Download gff for
FMO04878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33253-RA | 125..1198 | 37..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:46 Download gff for
FMO04878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19183545..19183725 | 37..217 | 100 | -> | Plus |
| X | 19185690..19186206 | 218..734 | 100 | -> | Plus |
| X | 19186278..19186443 | 735..899 | 99 | -> | Plus |
| X | 19186534..19186732 | 900..1085 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:30 Download gff for
FMO04878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19077578..19077758 | 37..217 | 100 | -> | Plus |
| arm_X | 19079723..19080239 | 218..734 | 100 | -> | Plus |
| arm_X | 19080311..19080476 | 735..899 | 99 | -> | Plus |
| arm_X | 19080567..19080765 | 900..1085 | 93 | == | Plus |
