FMO04879.5prime Sequence
1221 bp (1036 high quality bases) assembled on 2008-08-08
> FMO04879.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCTCGGAA
AAGTGGGAAAACAATGAGGAAATTAAGATTTTCCGGGAATACTTGCGTAT
ACCAACGGTGCATCCAGATGTTGACTATACTGCCTGTGTGGAGTTCCTGA
AACGTCAGGCTAGCTCCCTAAATCTTCCTGTTGAAGTGGTTTATCCTGCT
GTTCAAACGAAGCCCGTTGTGATCATCAAGTGGGAAGGAAGTCAACCCGA
ACTATCGTCCATTGTTCTCAACTCTCACACGGATGTGGTGCCAGTTTTTC
GAGAGAAGTGGACCCATGAACCCTTCTCCGCCGATATTGATGAAGAGGGT
AGGATCTTTGCACGGGGTACTCAGGACATGAAATCGGTGGGCACTCAGTA
TCTAGGAGCGATTCGCCTGCTGAAAGCTAGTGGCTTCAAACCAAAAAGGA
ATTTGTATGTGACCTTTGTTCCCGACGAAGAGACTGGTGGTCATCTGGGC
ATGGCGGAGTTTGTTAAGACGGATTACTACAAGAAAATGAACGCGGGATT
CAGCCTGGACGAAGGCGCCACTAGTGAAAGTGACGTTCATCATTTGTTCT
ACGCCGAACGTTTGCGATGGGGACTCAAGCTGAAAGTCAGTGGAACTTCT
GGTCATGGTTCCCTTTTGCTACCCAATACGGCAGGAGTAAAACTGAACTA
TCTGGTCAACAAACTGACTGAATTCCGCACCTCGCAAGTGGAGAACCTTG
CGAGAGATTCCAGCCTCAGCAAGGGCGATGTGACCACCGTGAATCTCACC
CAGTTAAGTGGCGGAGTCCAGAGCAATGTGGTTCCGCCACTTTTCGAGGC
GGTCTTCGACATACGGATTGCCATTACTGTGAATGTGGTTGCCTTTGAGA
AACAGATTCGCGATTGGTTGCGAGGAGGCGGGTGGTGGCATTGAAATTGA
TTTCTTCCAGATGAGCCTTATATAGGACCCACCAAGCTGGACAATTCATC
CCTACTGGCTAGCTGTCAAAGCCGCAATCGATGAGCTGATTGACGTTCAT
CCCATCGTTTGTCTGGCGCCACTGACAGTCGTTTCATTCGGAGAAGCTAC
CCAGCATTGATTCTTCACCATAAAAACCACATGCGAATCATGACCGAACA
GGTTCCGAAGCGTGAAGTGATGCTATGCAATGAGTGTACAGGAAGAATTA
TTCGCACAATCTGTGCTCGTG
FMO04879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6733-RA | 1291 | CG6733-RA | 26..1154 | 33..1145 | 5115 | 97.7 | Plus |
| CG6738-RA | 1291 | CG6738-RA | 51..956 | 48..954 | 1390 | 77.4 | Plus |
| CG17109-RB | 1373 | CG17109-RB | 44..942 | 39..941 | 1385 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23097907..23098399 | 130..622 | 2465 | 100 | Plus |
| 3R | 32079331 | 3R | 23098457..23098876 | 621..1038 | 1925 | 98.8 | Plus |
| 3R | 32079331 | 3R | 23099719..23100209 | 130..620 | 820 | 77.8 | Plus |
| 3R | 32079331 | 3R | 23095888..23096372 | 135..622 | 635 | 75.8 | Plus |
| 3R | 32079331 | 3R | 23096434..23096750 | 624..941 | 520 | 78.3 | Plus |
| 3R | 32079331 | 3R | 23097753..23097849 | 33..129 | 470 | 99 | Plus |
| 3R | 32079331 | 3R | 23100266..23100595 | 624..954 | 435 | 76.1 | Plus |
| 3R | 32079331 | 3R | 23092616..23092923 | 637..945 | 400 | 76.1 | Plus |
| 3R | 32079331 | 3R | 23092184..23092479 | 258..553 | 325 | 74 | Plus |
| 3R | 32079331 | 3R | 10676298..10676362 | 701..637 | 190 | 86.2 | Minus |
| 3R | 32079331 | 3R | 23091883..23091953 | 51..121 | 190 | 84.5 | Plus |
| 3R | 32079331 | 3R | 23095733..23095815 | 39..121 | 190 | 81.9 | Plus |
| 3R | 32079331 | 3R | 23098943..23098990 | 1045..1091 | 190 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:43 has no hits.
FMO04879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:44 Download gff for
FMO04879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 26..1112 | 33..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:39 Download gff for
FMO04879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 22..1108 | 33..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:35 Download gff for
FMO04879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 26..1112 | 33..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:35 Download gff for
FMO04879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23097753..23097849 | 33..129 | 98 | -> | Plus |
| 3R | 23097907..23098398 | 130..621 | 100 | -> | Plus |
| 3R | 23098458..23098875 | 622..1037 | 98 | -> | Plus |
| 3R | 23098933..23098990 | 1038..1091 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:44 Download gff for
FMO04879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18923475..18923571 | 33..129 | 98 | -> | Plus |
| arm_3R | 18923629..18924120 | 130..621 | 100 | -> | Plus |
| arm_3R | 18924180..18924597 | 622..1037 | 98 | -> | Plus |
| arm_3R | 18924655..18924712 | 1038..1091 | 91 | == | Plus |
