Clone FMO04880 Report

Search the DGRC for FMO04880

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:48
Well:80
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10470-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04880.5prime Sequence

603 bp (603 high quality bases) assembled on 2008-08-08

> FMO04880.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGGTCCGACAC
AATATTAATTGTTTTTATATCGGTTTGCACCGCCTTCCTGGGCGAAGGTC
TTACATGGGTGATGGTTTACCGGACGGAGAAGTACCAAAAGCTAAAGACC
GAGGTGGAAAAGCAGAGCAAAAAGCTGGAGCGCCGCAAGGAAATCCATGG
GGACTCCCTGGACAAAGCGGTAAAGAAGAAGATCGAGCGCGACGAGGAAA
AACTGAAAAACAACAACCGCGATCTCTCGCTTGTCAAGATGAAGACCATG
TTCGCCACGGGATTCGCCTTCACCGCCCTGTTGAGTATGTTCAACAGCAT
CTTCGACGGCCGTGTGGTTGCCCAGCTGCCCTTCACACCAATCTCCTGGA
TCCAGGGGTTAAGTCACCGAAATTTGTCCGGTGACGACTATACGGACTGC
TCCTTTATATTCCTCTACATCCTGTGCACCATGTCCATTCGTCAGAACAT
CCAAAAGCTTCTGGGTTTTGCCCCATCGCGCGCCGCAAGCAAGCAGGGTG
TAGGTCTGTTTGGTCCTGCTCCAGGCCAGTTCAAAGCAAGCTTTCTAGAC
CAT

FMO04880.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 701 CG10470-RA 100..648 37..585 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049422..19049831 176..585 2050 100 Plus
2L 23513712 2L 19049285..19049364 96..175 400 100 Plus
2L 23513712 2L 19049175..19049237 37..99 315 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:30:43 has no hits.

FMO04880.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:26 Download gff for FMO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..653 37..593 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:57 Download gff for FMO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 97..650 37..593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:01 Download gff for FMO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..653 37..593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:01 Download gff for FMO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19049175..19049235 37..97 100 -> Plus
2L 19049287..19049364 98..175 100 -> Plus
2L 19049422..19049836 176..593 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:26 Download gff for FMO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19049422..19049836 176..593 99   Plus
arm_2L 19049175..19049235 37..97 100 -> Plus
arm_2L 19049287..19049364 98..175 100 -> Plus