FMO04881.5prime Sequence
1153 bp (1054 high quality bases) assembled on 2008-08-08
> FMO04881.5prime
TTCGTATAGCATCCATTATACGAAGTTATCAGTCGACATGCTACATCGAA
CAGCTAGAATGTGGACGCTGTGCGTGCAGACAGCTTTGATAGCCACCTTG
GTGAGGGGATCCACTTCCCAGAAGGATAATCTCGTAGGAAGAACACAGAT
ATCCTACAATCCCAGCGAGCTCTCCGAGCCCCGATTCCTGGAGTACAGCA
ATCTATCCGATAAGCTACACCTAAGGGAAGCCATTGACAAAATCCTTATA
CCTCGAGTTGTGGGCACAACAAATCATAGCATCGTTCGCGAATACATCGT
CCAGAGTTTGAGGGATCTAGACTGGGATGTGGAAGTAAACAGCTTTCATG
ATCACGCTCCCATCAAAGGCAAATTGCATTTCCACAACATCATCGCCACC
CTGAATCCAAATGCTGAGAGATATCTGGTGCTGTCCTGCCATTATGATAG
CAAATACATGCCTGGAGTGGAATTCCTGGGGGCCACCGACTCGGCAGTGC
CCTGTGCCATGCTCCTCAACCTGGCCCAGGTGCTTCAGGAGCAGTTGAAA
CCCCTCAAGAAGAGCAAACTGAGTTTGATGCTCTTGTTCTTCGATGGCGA
GGAGGCTTTTGAGGAGTGGGGACCCAAGGACTCCATCTATGGAGCACGAC
ACCTGGCCAAAAAGTGGCACCATGAAGGAAAACTTGATAGAATAGATATG
CTGGTGCTCCTGGATCTGTTGGGAGCCCCCGATCCGGCATTCTACAGCTT
CTTCGAAAACACCGAGTCCTGGTACATGCGTATCCAGTCCGTGGAGACAC
GTCTTGCCAAGTTGCAGCTCCTGGAGCGCTATGCCAGCAGTGGAGTTGCC
CAGCGCGACCCCACCCGCTACTTCCAGTCGCAGGCCATGCGATCCTCTTT
CATCGAGGACGATCACATACCCTTCCTGCGGCGAATGTGCCGATCTTGCA
CCTCATTCCGGTGCCCTTTCCCAGTGTATGGCATACGCCCGACGATACGC
CAGCGGTGATCGATTATGCGACGACGGACACCTGGCACTGATTATACGGC
TTTTTCGCTTTGGGAGTTTCTGCTGGTCGGACGAGGCAAGGCAAGCTTTC
TTAGAACATCGGTGGCGCGCCGGTCAGGTAATGGCTAATCATAATCTAAA
TTC
FMO04881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| isoQC-RA | 1975 | CG5976-RA | 426..1469 | 38..1081 | 5040 | 99.1 | Plus |
| isoQC-RB | 1617 | CG5976-RB | 177..1111 | 147..1081 | 4495 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20475561..20476497 | 145..1081 | 4355 | 99 | Plus |
| 3L | 28110227 | 3L | 20475387..20475497 | 38..148 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:23 has no hits.
FMO04881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:29 Download gff for
FMO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isoQC-RA | 426..1477 | 38..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:11 Download gff for
FMO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5976-RA | 418..1469 | 38..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:23 Download gff for
FMO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isoQC-RA | 426..1477 | 38..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:23 Download gff for
FMO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20475565..20476505 | 149..1087 | 98 | | Plus |
| 3L | 20475366..20475497 | 20..148 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:29 Download gff for
FMO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20468466..20468597 | 20..148 | 92 | -> | Plus |
| arm_3L | 20468665..20469605 | 149..1087 | 98 | | Plus |
