FMO04882.5prime Sequence
1212 bp (1059 high quality bases) assembled on 2008-08-08
> FMO04882.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGGCGAT
TTAAGTTATGTGCTTCGCCGAGAGAGGTATTTAAAAAGTTTTCACGAATA
TATGTATTAGCAAATTTTTTAAATTTCCAGGTTATGAAGTACGAAGACTT
TATAAAACGCATTCGAAAAAGCCTCTACTATGGCGTTGGAACACCAGACA
CAGAAATGTCGGTCTCCTTACCCTTTGCGGAGTACGCGGCAGATTTGTTT
TCGGAGACTCATCGCGGGCATTCTTTGCATCGCCTAAGTTGCGTATCTGC
TGCACAAGTACATGCCACGCCTTGCTCTTTAATTATGGCATTGATATACC
TCGATCGCTTAAACGTCATCGACTCGGGCTATAGCTGCAGAATCACACCA
CAGCAGCTGTTTGTTGTGTCACTAATGATTTCCACAAAATTCTACGCGGG
CCACGACGAACGGTTCTATCTGGAAGACTGGGCCAGTGACGCTTGTATGA
CGGAAGATAGGCTCAAGGCAGTCGAGCTCGAATTTCTTTCCGCTATGGGT
TGGAATATATACATATCCAATGAGCTATTCTTTGATAAGTTAAGAAACGT
TGAACGTTCTTTGGCTGAACAGCAGGGACTGCGTAGAGGTTGGCTCACTT
ACAGTGAGCTCGTGCAGTTGCTGCCTAGCCTTGAATGGACGAAATTCCTC
GTTAACAGCCTGTCTGTACTATCTCTAAGCTATGCGGCAAGTATTATAAC
ATTAGCCGGAGCTTTTTTTATTGCGAGCCAAGTTCCCGGTACGTTATGGC
ATCGGGATGTGGAAACTGCCTCAGATTTCACCATGACAATTAGCAGTCAG
GTATCCGTTTCAAATGCATTAGAGTCCACACCTTTTATTAATGTCCAAGT
ATCCTCACTTTTACGTAAACGAGTAACGTGAATGTTGAATTGATGAATCT
TGAGAGACAGCTGCGCCAGGGCAAGACTGAATAAAATTGATATAGCATCG
CGCATCATCAGTACTACGCTTTCATCATAGCACCTGTCCACACTGATTTA
TTGTTGCCCAGATGACAGATGCTAATATAAATCGCCCACAGGACTACAAA
ACACAGAACTTCCATAACGTAGATCGTCACTAGAGAGCCAAGGCTGAATG
ATCGTATTGCAAGCCAACGAGCATGCAGTCAGCTTCCTAGAACCTTGCTT
GGGCCGCGCGTT
FMO04882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40191-RB | 1579 | CG40191-RB | 66..1099 | 41..1060 | 4820 | 98.6 | Plus |
| CG40191-RC | 1518 | CG40191-RC | 280..1225 | 129..1060 | 4380 | 98.5 | Plus |
| CG40191-RD | 1386 | CG40191-RD | 100..1045 | 129..1060 | 4380 | 98.5 | Plus |
| CG40191-RC | 1518 | CG40191-RC | 246..283 | 41..78 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1265342..1265788 | 547..990 | 2085 | 99.3 | Plus |
| 2R | 25286936 | 2R | 1264458..1264841 | 41..424 | 1920 | 100 | Plus |
| 2R | 25286936 | 2R | 1265171..1265294 | 425..548 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:22 has no hits.
FMO04882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:21 Download gff for
FMO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RB | 63..1104 | 38..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:58 Download gff for
FMO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RB | 60..1101 | 38..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:58 Download gff for
FMO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RB | 63..1104 | 38..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:58 Download gff for
FMO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1264455..1264841 | 38..424 | 99 | -> | Plus |
| 2R | 1265171..1265293 | 425..547 | 100 | -> | Plus |
| 2R | 1265343..1265874 | 548..1064 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:21 Download gff for
FMO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 391088..391474 | 38..424 | 99 | -> | Plus |
| 2RHet | 391804..391926 | 425..547 | 100 | -> | Plus |
| 2RHet | 391976..392507 | 548..1064 | 97 | | Plus |
