FMO04883.5prime Sequence
954 bp (954 high quality bases) assembled on 2008-08-08
> FMO04883.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGAAGGTAT
GGGGCACAAATCTCACTGCCATTACCTGGGCCCATGCCGTCAACAGCCAG
CAATTGCTGGACGAGGTCCTAACCGAAACCAGTGGCATTGACTTCATCGA
AGCGGACATTGTGCTGGGCAAACTGAATGGCGATGGCGAGGACATGCCCA
TAATGGCCCATCCGCCGGCCAATGTCTCTGATCTTACGCTGTCGGAATTT
CTCAACCAGATCATTAATTTCAACCGTGATCATGAGGACCAAAAAAAGGG
CGTTAAGCTCGACTTCAAGTCGATCGAGGTATTCGAGGGTTCCCTGGACA
TTCTGGACGTGAATATTCCGAACCCTACCACGTATCCTGTGTGGATAAAC
GCCGATATTCTAAGTGGTCCCGTGGAACAGAATAGAACCGTACCCGTTGA
TGCGGACCGATTCTTCGCCGGCTGTATGCGCTACAAACAGGCAGTGCTCT
CCATTGGCTGGACAACTAACTGGGGAGCCGACTTCCGGGATGGCGAGTAC
ACGCAGCAGCAGTGTGATGACATGCTGGAAACGCTGAGCGAGAACAATGT
CCTATCCACTGGCCAGGCCATAACCTTTCCCGTGCGCGCTGGCATTGCCG
CCAACAGCGAGGAGCAACTGCATCGACTGGTGGCCGCGGTGAACGAGACA
AACGAGAGCACCCTGACCATCTGGTCGTCTGCCGGTGACTATGTGGATGT
GGATAAGTTGCGCAAACTGATCTTCAGCTTCGGCTTGGATAGAGTCTATC
TGGATGTGCCGGAGGAGCTGGCCTCACAATTGAACCTGGACAATCCCGGC
AACGGAGCCAGCACCTTCAAATCCCTGTTTGGCTTCAGTTTCATGAGCCT
TTGTTTTGGGCTCTGTCCAGCTGGATGCAGCGGTTAGCAAGCTTTCTAGA
CCAT
FMO04883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7231-RF | 1264 | CG7231-RF | 273..1181 | 30..936 | 4480 | 99.7 | Plus |
| CG7231-RD | 1324 | CG7231-RD | 333..1241 | 30..936 | 4480 | 99.7 | Plus |
| CG7231-RC | 1256 | CG7231-RC | 265..1173 | 30..936 | 4480 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7986139..7986702 | 374..936 | 2770 | 99.8 | Plus |
| 2L | 23513712 | 2L | 7985834..7986075 | 132..373 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 7985675..7985770 | 38..133 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:35 has no hits.
FMO04883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:27 Download gff for
FMO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7231-RC | 265..1176 | 30..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:59 Download gff for
FMO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7231-RC | 878..1789 | 30..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:45 Download gff for
FMO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7231-RC | 265..1176 | 30..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:45 Download gff for
FMO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7985666..7985768 | 30..131 | 98 | -> | Plus |
| 2L | 7985834..7986075 | 132..373 | 100 | -> | Plus |
| 2L | 7986139..7986705 | 374..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:27 Download gff for
FMO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7985666..7985768 | 30..131 | 98 | -> | Plus |
| arm_2L | 7985834..7986075 | 132..373 | 100 | -> | Plus |
| arm_2L | 7986139..7986705 | 374..940 | 99 | | Plus |
