FMO04884.5prime Sequence
1246 bp (1017 high quality bases) assembled on 2008-08-08
> FMO04884.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAAAAAC
CACTTGGAAATGATTGGGCGCAATGAGAGCCCCAGCAAGAAGGCGAAATT
CTGGCAGTCCTACATCAGGTCCCTGAAGGGCTCCGAGGATATCCGTGCCC
ACGAGGCGCCCCGTGCCTCTCGTCCCTACAGCTCCTACCTGGACTCGCCC
TCCTACAGGAGCATCTATGACGAGCCCGCCACCGCCAATGAGCGCGTCCA
GTCCTCTGGCTACAGATATCTGCCAGTGAGCCGCGACACCTACGGCTACT
CGCCCCGTGCCATCTACGATCATCACTACAGCCGAACAATTCCAGCTAAC
TACGACGCAGAGAAGGCCTGGAATGATCATCTGAAGCGCATGCAGGAGAT
CGAGCGCAGGTACCCATCTCGCTATGGTCTCTACTTGAGGGACAAGCCAC
TCACGCCCAACTCGCTGGTGCCCCTGGAGTACGAGCCAGAGGACAAGCTG
CTGGCTGAGCTCAACAAGGCTCGTCGCTCGGCCTCGCCGTTCCGCCCTGC
CAGGACGACCCGTGCCGGCAGCGAGCCGTACGTGCCACCGCCGAGCTACT
GGAACCGCGAGGGCAGCGTGCCACGCGGAGGACCCTCGGTCTTCGATCGT
GCCACCAGCTTGGCCCCGTTCACGCGGCCCAGCTTCCGTGCCAGCTCCCT
GGAGCCGCTGGACGAACTCTTTGAACGTAAGTTGCCCGCGATCGCCGAGG
CTGATTCGGCGCCAGCTGATGCGCCCAGTCGGCCACTCGGTATCTTTGAG
CGCGCCGGTTCGCCAAGTCCCACTCCCGTGAAAGCCGGTCGCTGGGGACC
CCGTCCCACCGAAGTCGCCTACGATGCTGAGGGACTCCCCATCTTTCACC
CCACGCAACCGCTTCAGGATCTGCTGAGCCCCAGCCCCAACTTGCCGATC
CTCTTCGATTGTGCGCCGATCCCTTCTGGTGGGACGGTGATGACCTGTGC
CCTTCCGCGCCACCTCGGTGCCCCGGTGCCTCGAGCCCGTAGCCCGGGAT
TCGTACTTGTCGCCGGTGAAAGACGGCTACTTGTGGTCAAGCACCAGCCT
AGACCCTTGAACCTGAGGAAGAGATTTATTCGCAAGCCTTTCTAACCATT
CGGTTGGCGCGCGCGCCAGGTATGGCCTAATCTATCGATTCATATCCATA
TCCAACTATGCGTAGAGAAATCTCGTGCTACATGTGACATCAGATG
FMO04884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RB | 2110 | CG6803-RB | 115..1209 | 39..1131 | 5095 | 98.3 | Plus |
| Mf-RM | 1939 | CG553-RM | 115..1186 | 39..1110 | 5030 | 98.4 | Plus |
| Mf-RL | 1905 | CG553-RL | 81..1152 | 39..1110 | 5030 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15173980..15174344 | 883..519 | 1825 | 100 | Minus |
| 3R | 32079331 | 3R | 15178280..15178490 | 339..129 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 15172603..15172831 | 1110..882 | 615 | 92.3 | Minus |
| 3R | 32079331 | 3R | 15176184..15176295 | 519..408 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 15179038..15179129 | 130..39 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 15176362..15176437 | 411..336 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:16 has no hits.
FMO04884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:53 Download gff for
FMO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RB | 105..1212 | 29..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:03 Download gff for
FMO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RB | 105..1212 | 29..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:34 Download gff for
FMO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RB | 105..1212 | 29..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:34 Download gff for
FMO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15172595..15172830 | 883..1117 | 91 | <- | Minus |
| 3R | 15173981..15174343 | 520..882 | 100 | <- | Minus |
| 3R | 15176184..15176293 | 410..519 | 100 | <- | Minus |
| 3R | 15176364..15176433 | 340..409 | 100 | <- | Minus |
| 3R | 15178280..15178489 | 130..339 | 100 | <- | Minus |
| 3R | 15179039..15179139 | 29..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:53 Download gff for
FMO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10998317..10998552 | 883..1117 | 91 | <- | Minus |
| arm_3R | 10999703..11000065 | 520..882 | 100 | <- | Minus |
| arm_3R | 11001906..11002015 | 410..519 | 100 | <- | Minus |
| arm_3R | 11002086..11002155 | 340..409 | 100 | <- | Minus |
| arm_3R | 11004002..11004211 | 130..339 | 100 | <- | Minus |
| arm_3R | 11004761..11004861 | 29..129 | 96 | | Minus |
