FMO04885.5prime Sequence
475 bp (475 high quality bases) assembled on 2008-08-08
> FMO04885.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAACACCA
CAAAAATGGTTTACAGTTATAGAATTTTATGGCTTTCCGGCGTTTTACTA
GGTCCTATTTTGCTGGCCGCCATTGCGGTTCAAGGCCAAGAGCCAGCCAG
TCCAGTATTTCAAAATCACAAGACGAAGGAATGGACGAATTTAGATAATA
TAACATTCTCATTCGATTGCAAGAGGCGTTCTGTGGGCTTCTATGCCGAC
ATGGAGTACAATTGCCAGATCTTTCACATGTGCGACGAGGAGGGCAATCG
GATTCCCCATCTGTGCGCCAATGAGACGAGCTTTAACCAGGAGTACAGAA
TCTGTGATTGGGACTACAACTTTAACTGCACAGAGTCACCCAAATGGTTC
TACCTGAACGAACTGACCTATGCCACAGATCCGCCAGATGAAGATGACGA
GGATTACGCAAGCTTTCTAGACCAT
FMO04885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ckd-RE | 1145 | CG14959-RE | 555..974 | 38..457 | 2100 | 100 | Plus |
| ckd-RD | 1246 | CG14959-RD | 317..736 | 38..457 | 2100 | 100 | Plus |
| ckd-RC | 1340 | CG14959-RC | 750..1169 | 38..457 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3267119..3267287 | 100..268 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 3267422..3267547 | 266..391 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 3266651..3266716 | 38..103 | 330 | 100 | Plus |
| 3L | 28110227 | 3L | 3267609..3267674 | 392..457 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:23 has no hits.
FMO04885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:36 Download gff for
FMO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ckd-RC | 739..1179 | 28..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:36 Download gff for
FMO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14959-RC | 739..1179 | 28..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:19 Download gff for
FMO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ckd-RC | 739..1179 | 28..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:19 Download gff for
FMO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3266640..3266714 | 28..101 | 94 | -> | Plus |
| 3L | 3267121..3267287 | 102..268 | 100 | -> | Plus |
| 3L | 3267425..3267547 | 269..391 | 100 | -> | Plus |
| 3L | 3267609..3267684 | 392..466 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:36 Download gff for
FMO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3266640..3266714 | 28..101 | 94 | -> | Plus |
| arm_3L | 3267121..3267287 | 102..268 | 100 | -> | Plus |
| arm_3L | 3267425..3267547 | 269..391 | 100 | -> | Plus |
| arm_3L | 3267609..3267684 | 392..466 | 94 | | Plus |
