FMO04886.5prime Sequence
1225 bp (1035 high quality bases) assembled on 2008-08-08
> FMO04886.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGACGAGAGC
ATCACGCGAATGAACCTGGCGGCCATCAAGAAGATCGACCCGTACGCCAA
GGAGATCGTGGATTCGTCCTCGCACGTCGCCTTCTACACGTTCAACTCGT
CGCAGAACGAGTGGGAAAAGACCGATGTGGAGGGAGCCTTCTTCATATAC
CACCGCAACGCGGAGCCCTTTCACAGCATCTTCATCAACAACCGACTGAA
CACCACGTCCTTCGTGGAGCCCATCACCGGCAGCCTGGAGCTGCAGTCGC
AGCCGCCGTTCCTGCTCTACCGCAACGAGCGCTCGCGCATCCGCGGCTTC
TGGTTCTACAACAGCGAGGAGTGCGACCGCATCAGCGGCTTGGTGAACGG
GCTGCTCAAGTCCAAGGATCAGGGAACGAATGGCCAGGCCCAGCGTCACG
TCTCCGCGCCCCAGCAGCCAAAGCAGGACAGCAGCCAGCCGGCCAGCATA
TTCAACATGCTGACCAAGGCCCAGAAGGACTACAATGCCCAGGTGAGCGG
CGGGCAGCCGAAGACGCCTTCGGCGGAGAACGTAACGGCCGGCAATGTGT
TGAAGTTCTTCGAATCGGCCAAGCAGGCCACGGCAGAGTCACTGTTCCAC
CGCGTCCAGCCGCTCTCCGTGGACCAGCTGGAGAAACAGCAGCGGGCAGC
CACGCCTGGCGAGGATCTGTTGCCCCCGGCAGGCAGGGACAATCACGAGA
GCCGGCTGTCGCCCTTCCAGAAGATGCAGCAGCTTAACATTCAGCTCCTG
AGCGACCTGAAGATCGGTAAAAGCTACGCTACGGCTCAATCTCCGACAGT
CGCCCCGTCCTCGTCGGCGCTGATGGCCAACGACGATGCCGGCAGTGCTT
GCGGAGACTGCTGGCTGGCGACAAGCCCGGGGCCGGCCCTCATGCCGCCC
ACCATGTTCGAGCGCCCAACAACGGCATCCGGAGCCACAGCAGCCACAGC
AGCACAGCAGCCACTTGCTGAACTCGAACGCAGTTCGTCCAGGGCCTTCA
CGTACTATTCCAGACGATTAAGAGTTTGCCACAGGCCTGTCACGAGGCTA
CTGAACGCTGTTTCATCTACTGCTGAAATCAGCTACAATATCAGCCAAGC
TTTCCGGACCATCATTGAGCGCGGTCCAGTATGGACTTATATCTCTAATT
CGATGTGACTGTCATGCGTGCATAG
FMO04886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1225 | CG11183-RB | 85..1199 | 36..1143 | 4980 | 97.4 | Plus |
| DCP1-RA | 1513 | CG11183-RA | 85..1199 | 36..1143 | 4980 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23889173..23890192 | 1055..36 | 4720 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:00 has no hits.
FMO04886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:07 Download gff for
FMO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 76..1119 | 28..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:37 Download gff for
FMO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 65..1108 | 28..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:20 Download gff for
FMO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP1-RA | 76..1119 | 28..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:20 Download gff for
FMO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23889184..23890204 | 16..1043 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:07 Download gff for
FMO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19776707..19777727 | 16..1043 | 98 | -> | Minus |
