FMO04888.5prime Sequence
434 bp (434 high quality bases) assembled on 2008-08-08
> FMO04888.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGGACGCAG
AGAAATGCAGTTGGCAATTGGCTGTTGGTATTAACAGCCGTTATCGGATT
TCTAACTTTCATATGGATTCCGCAGACCTCAGCCGAATGTCAAACGCGAT
CGATTTACTGCTATGAGTGCGACTCCTGGACTGATGCCCGCTGCAAGGAT
CCTTTCAACTATACAGCCCTGCCAAGGTGGTGCGACGCATGTGTACGTCA
CAGTTACAGATCAATTTATTCATGGTCGATCACGTGTGCATGGTGGAAGG
TTCAGGCAGTGGACGTATGTGCTTTTGTGAGGAAGATATGTGCAATTCTA
GTAAAAATTTACACACTAATGGTTGCCAGCTGCATCTCATACCCATCGCA
GTGGCAGTATCTTGGCGCAAGCTTTCTAGACCAT
FMO04888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qvr-RB | 5055 | CG33472-RB | 725..913 | 39..227 | 945 | 100 | Plus |
| qvr-RB | 5055 | CG33472-RB | 984..1175 | 225..416 | 900 | 97.9 | Plus |
| qvr-RC | 5046 | CG33472-RC | 975..1166 | 225..416 | 900 | 97.9 | Plus |
| qvr-RC | 5046 | CG33472-RC | 725..904 | 39..227 | 455 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11447533..11447724 | 225..416 | 900 | 97.9 | Plus |
| 2R | 25286936 | 2R | 11446130..11446189 | 85..144 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 11447156..11447209 | 145..198 | 270 | 100 | Plus |
| 2R | 25286936 | 2R | 11444712..11444760 | 39..87 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:52 has no hits.
FMO04888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:08 Download gff for
FMO04888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qvr-RB | 725..912 | 39..226 | 100 | -> | Plus |
| qvr-RB | 986..1178 | 227..420 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:50 Download gff for
FMO04888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33472-RA | 704..1084 | 39..420 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:41 Download gff for
FMO04888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qvr-RB | 725..912 | 39..226 | 100 | -> | Plus |
| qvr-RB | 986..1178 | 227..420 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:41 Download gff for
FMO04888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11446133..11446189 | 88..144 | 100 | -> | Plus |
| 2R | 11447156..11447208 | 145..197 | 100 | -> | Plus |
| 2R | 11447270..11447298 | 198..226 | 100 | -> | Plus |
| 2R | 11447535..11447727 | 227..420 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:08 Download gff for
FMO04888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7333638..7333694 | 88..144 | 100 | -> | Plus |
| arm_2R | 7334661..7334713 | 145..197 | 100 | -> | Plus |
| arm_2R | 7334775..7334803 | 198..226 | 100 | -> | Plus |
| arm_2R | 7335040..7335232 | 227..420 | 96 | | Plus |
