FMO04890.5prime Sequence
566 bp (566 high quality bases) assembled on 2008-08-08
> FMO04890.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGAAATAT
ATTCCTTTACTTTTAGTAGCCCAGCTATTAATAGTGGCTGCCAAGCCCAC
AAATCCACAACTCCTAAACTCCGATGATCCAGTGCAAAGGGAGTTGGAGA
GACAGGCCAAGGAGGAGACAGTCCACCTGCTGAACTCGTTGTTCCGATCA
CAAATCGCCTATTTCTCCGAGGTGAAGGCCGCTCTGAATCCCCAGACCAA
GCGATTCCAAGATATCAGTCTTTATATAACGCGCCTGAGCCAAGCCATTG
ATGAGCAGGAACTGGACCGAAAGGATGAGCTGTGGCAGAATATCTTCGAA
GAGTTCAAGGACTCTCCACTGCTGATTAATCGGCAATCCGAGACAGGACT
CACCGACTTGCAATATAAGACACTCCTGACCGGCCAGAAGCTGCAGAATA
TATCCACCAAGTTCGTGAGCGATGTGGCCGATTACTTCTGGGAAATGGCC
AAGATTAGTGGCAAAGTCGTTGGCAATGGGATAGCGAGCCAGAACGAAGC
AAGCTTTCTAGACCAT
FMO04890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33307-RB | 1832 | CG33307-RB | 42..551 | 39..548 | 2550 | 100 | Plus |
| CG33307-RA | 586 | CG33307-RA | 42..551 | 39..548 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13841096..13841377 | 353..72 | 1410 | 100 | Minus |
| 2L | 23513712 | 2L | 13840841..13841037 | 548..352 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 13841444..13841479 | 74..39 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:34 has no hits.
FMO04890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:07 Download gff for
FMO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33307-RA | 32..551 | 29..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:01 Download gff for
FMO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33307-RA | 21..540 | 29..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:33 Download gff for
FMO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33307-RA | 32..551 | 29..548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:33 Download gff for
FMO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13841096..13841374 | 75..353 | 100 | <- | Minus |
| 2L | 13841444..13841489 | 29..74 | 91 | | Minus |
| 2L | 13840841..13841035 | 354..548 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:07 Download gff for
FMO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13840841..13841035 | 354..548 | 100 | <- | Minus |
| arm_2L | 13841096..13841374 | 75..353 | 100 | <- | Minus |
| arm_2L | 13841444..13841489 | 29..74 | 91 | | Minus |
