FMO04891.5prime Sequence
776 bp (776 high quality bases) assembled on 2008-08-08
> FMO04891.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGAGGCA
GGGCGTTTTAGTTACGTCACCTTTGTCGATTCCGCTCCCATGGTGCTCAA
GGAGACCAACATCAACAAGATGCACACTCCATCCGAGGGCATGTTGCACA
TCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGCGGAAGCCACG
ATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGATCCAAAC
CACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGCGGCATCATCCAGC
CCAATCAGGAGGCCACCATCAACATATGGTTGAAGTCGGAGCACAAGCTT
AGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTATGGTCGCGCCAGG
CGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGGCGGAGCAAATCCC
CCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCGCTTCGATGAG
AACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCAGTAAGGCCAG
CGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCAGCTACGGCAA
TGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATACGTGACGCTGGCG
CTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGTACCAGCAGCT
CGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCGTATTCGTGCGCTA
AGCGCAAAGCAAGCTTTCTAGACCAT
FMO04891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RC | 1656 | CG33523-RC | 100..819 | 39..758 | 3600 | 100 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 1143..1835 | 66..758 | 3465 | 100 | Plus |
| Vap-33B-RF | 2574 | CG33523-RF | 1045..1737 | 66..758 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5928702..5929040 | 241..579 | 1695 | 100 | Plus |
| 3L | 28110227 | 3L | 5929104..5929283 | 579..758 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 5928536..5928640 | 138..242 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 5928224..5928297 | 66..139 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:08 has no hits.
FMO04891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:25 Download gff for
FMO04891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RC | 100..827 | 39..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:36 Download gff for
FMO04891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RC | 100..827 | 39..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:14 Download gff for
FMO04891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RC | 100..827 | 39..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:14 Download gff for
FMO04891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5929104..5929291 | 579..767 | 97 | | Plus |
| 3L | 5927881..5927907 | 39..65 | 100 | -> | Plus |
| 3L | 5928224..5928296 | 66..138 | 100 | -> | Plus |
| 3L | 5928537..5928640 | 139..242 | 100 | -> | Plus |
| 3L | 5928704..5929039 | 243..578 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:25 Download gff for
FMO04891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5920981..5921007 | 39..65 | 100 | -> | Plus |
| arm_3L | 5921324..5921396 | 66..138 | 100 | -> | Plus |
| arm_3L | 5921637..5921740 | 139..242 | 100 | -> | Plus |
| arm_3L | 5921804..5922139 | 243..578 | 100 | -> | Plus |
| arm_3L | 5922204..5922391 | 579..767 | 97 | | Plus |
