FMO04893.5prime Sequence
1223 bp (1021 high quality bases) assembled on 2008-08-08
> FMO04893.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGTCAGC
TCCAACACACACTGCCGAGGAGGCACATCTGCTGGGCACCATGCCCGTTG
ATCCCATGGATGACATCGAACTGCGCTCCGTGCAGCTGCAATTCCCCAAT
GCCCGCGGCTCCATCCTGGAGGCCTGCGAACAGCGACGCGTGCCCACAGA
CAAGGGCGATGTCCACGTGGCCATACAGGGCGATACGGCCAAGCCGGCCA
TTATCACCTACCACGATTTGGGCCTCAACTACGCCACCAGCTTTGCTGGC
TTCTTCAATTTTCCAGTGATGCGAGGTCTGCTGGAGAACTTCTGTGTTTA
CCACGTGACTGCTCCTGGCCAGGAGGAGGGTGCACCCACTTTGCCAGAGG
ATTACGTCTATCCGACCATGGATGATCTGGCCGCCCAGCTGCTTTTCGTG
CTATCCCACTTTGGCCTAAAGTCGGTGATTGGTTTCGGCGTTGGTGCCGG
GGCGAATATTCTGGCCCGTTTCGCTCACGCCCATCCGGACAAGGTGGGCG
CCCTGTGCCTGATCAATTGCGTGTCCACGCAGTCGGGCTGGATCGAGTGG
GGCTACCAGAGCTTCAATGCCCGCTTCTTGCGCACCAAGGGCATGACACA
GGGCGTGATCGATTATCTGATGTGGCACCACTTCGGACGCAATCCGGAGG
AGCGCAATCACGACCTGGTGCAGATGTACAAGCAGCACTTCGAGCGTGGC
GTTAATCCGACCAATCTTGCCATGCTGATCAACGCGTACATCCATCGTAA
CGACCTGCATCTGGCACGCACTCCGCCAGGTACTCCGGGCAGCGAAACGG
CGGCCACCACGCTGAAGATGCCGGTGATCAATATCACAGGTTCGCTCTCG
CCGCACGTCGACGACACGTGACCTTCATGGCCGTCTAGATCCTACAAACT
CATCGTGATGAAGATTTCCGATTGCGCTTTGGTGCTGAGGAGCAGCTGCT
AAGCTGGCGAGCCTTCGCTCTTCTGCAGGCGAGGGCTACGCAACGCCGCT
GTCCCCGCCAGCGAGTCGCCCTGTGAACTAAATACACAACTACTCCTCAA
TCTTCTTGCACTCGGAACACCACAACAGGCATGAAGAACCGATCGGGAGC
CGGAAGAACGAATCCACGGCACCTGAACCTTCGTTGGCATTCCCTTGGGA
AAGCGCCCTCAAATGTGTCACAT
FMO04893.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RI | 2798 | CG15669-RI | 433..1514 | 40..1107 | 5010 | 98.3 | Plus |
| MESK2-RE | 2619 | CG15669-RE | 822..1834 | 40..1041 | 4785 | 98.8 | Plus |
| MESK2-RD | 2218 | CG15669-RD | 421..1433 | 40..1041 | 4785 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511961 | 402..957 | 2690 | 99.6 | Plus |
| 2R | 25286936 | 2R | 21510866..21511060 | 86..280 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 281..401 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 21510155..21510201 | 40..86 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:05 has no hits.
FMO04893.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:46 Download gff for
FMO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RI | 426..1514 | 32..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:15 Download gff for
FMO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RB | 853..1871 | 32..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:03 Download gff for
FMO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RI | 426..1514 | 32..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:03 Download gff for
FMO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21510867..21511060 | 87..280 | 100 | -> | Plus |
| 2R | 21511123..21511243 | 281..401 | 100 | -> | Plus |
| 2R | 21511404..21511968 | 402..963 | 99 | -> | Plus |
| 2R | 21512093..21512177 | 964..1040 | 89 | -> | Plus |
| 2R | 21515888..21515913 | 1041..1066 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:46 Download gff for
FMO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17398372..17398565 | 87..280 | 100 | -> | Plus |
| arm_2R | 17398628..17398748 | 281..401 | 100 | -> | Plus |
| arm_2R | 17398909..17399473 | 402..963 | 99 | -> | Plus |
| arm_2R | 17399598..17399682 | 964..1040 | 89 | -> | Plus |
| arm_2R | 17403393..17403418 | 1041..1066 | 96 | == | Plus |
