FMO04894.5prime Sequence
1187 bp (1042 high quality bases) assembled on 2008-08-08
> FMO04894.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAATGGAA
AAGTCTGGCAAATTTTCAGATTACCTCTTCGCCAAAATGGGTCCCCCCAC
CTCAACTGAGCTGCCTCCGAAGACCACGGAATGCAGCGATGCCCCCGTGG
AGTTGACCGGTTACCGCAGGTGGCTCTCCGAGAATCTAATGCTCCTGGTC
ACCCTTTCCGGAGTTCTCCTTGGTGTAATACTAGGACTCTCCTTACGGCC
GCTTAATTTACATGGGGACTCCATCATGCTGATTTCCTATCCTGGCGAAC
TGTTTATGCGCGTACTCAAGCTGATGATTTTGCCGCTAGTTATATCGAGC
CTTATTGCCGGATCGGCCAGCCTTAACGCCAAAATGAACGGCAAGATAGC
GCTGCGCACGTTGGTTTACTTTGCCAGCACTTCGTTCTTTAACGCTGCAC
TGGGAATCGCTCTCGTTCTGCTCATCCATCCTGGAAATCCGGATCTGCAC
AATGCGGACGATCGATCTACAGATCGGCGGGCAGTTAACCTTCTAGATAG
TCTTTTGGATTTGGGCAGGAACGTATTCCCGGACAACCTGTTTCAGGCCT
CCATTCAGCAGGCGCACACCGTCTACTTGCCCAAGCCGAGTATCCTGCAC
GTCTTCAACGAAACGATGAATGACACCTTGGCATCCGGATCGGAGGCCCA
ACGCTTGTCTGAAGACCTTACGGAGGATGTGGTGCTGGTGAGGGACATCC
AGTACCGCAGTGGAACCAACACCCTGGGCATCGTCTTCTTCTGCCTGGTG
TTTGGTACTTTTTTGGGAACCATCGGCCAGAAGGGTCAGGTCGTGGTTGA
CTTCTTTGCCGCCATTTTTGAGCGCCGCTGCCCTGCCCATTACATTCCGC
TGCATGAACGAGAAACTCAAGTGGATCCGCGGATCACGCGATTTGTCCTT
CCATCGATGCACATCACATGGACGAACGGCCCTATATATCGCAGTGCATC
GATATCATGCCCAGATGAGCGGCATGGTCTGGGATTTGGAAGAGCTCCTA
CGTCTTCTGACCTCCACGCTGCTCATGACTCGCAGCGTCGAGTGCTGCCT
GATCCTTTCTGGGCTGACGCATGCAGCTTCTAAACATCGTGGCCGCGACC
AGTATGCTATCTATCTAATCTAATCAATCACTAGCTA
FMO04894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat2-RC | 3398 | CG3159-RC | 797..1630 | 39..872 | 4170 | 100 | Plus |
| Eaat2-RD | 3169 | CG3159-RD | 597..1401 | 68..872 | 4025 | 100 | Plus |
| Eaat2-RA | 3057 | CG3159-RA | 485..1289 | 68..872 | 4025 | 100 | Plus |
| Eaat2-RC | 3398 | CG3159-RC | 1897..2143 | 873..1099 | 710 | 91.1 | Plus |
| Eaat2-RD | 3169 | CG3159-RD | 1668..1914 | 873..1099 | 710 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 740356..740692 | 569..233 | 1685 | 100 | Minus |
| 2L | 23513712 | 2L | 739711..740017 | 872..566 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 740799..740995 | 235..39 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 738660..738839 | 1040..871 | 410 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:34 has no hits.
FMO04894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:08 Download gff for
FMO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RC | 793..1630 | 36..872 | 99 | -- | Plus |
| Eaat2-RC | 1897..2130 | 873..1088 | 91 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:09:58 Download gff for
FMO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RB | 780..1843 | 36..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:07 Download gff for
FMO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat2-RC | 793..1630 | 36..872 | 99 | -- | Plus |
| Eaat2-RC | 1897..2130 | 873..1088 | 91 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:07 Download gff for
FMO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 738604..738837 | 873..1088 | 91 | <- | Minus |
| 2L | 739711..740014 | 569..872 | 100 | <- | Minus |
| 2L | 740357..740690 | 235..568 | 100 | <- | Minus |
| 2L | 740800..740999 | 36..234 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:08 Download gff for
FMO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 738604..738837 | 873..1088 | 91 | <- | Minus |
| arm_2L | 739711..740014 | 569..872 | 100 | <- | Minus |
| arm_2L | 740357..740690 | 235..568 | 100 | <- | Minus |
| arm_2L | 740800..740999 | 36..234 | 99 | | Minus |
