FMO04895.5prime Sequence
1213 bp (1054 high quality bases) assembled on 2008-08-08
> FMO04895.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAACTGCAA
CCAGCGGCAGTGGACTCCATCTGGAGGCCATCGATCGCATCGGCTCCATT
CCCCTTGTGGAATCCAGTGTGAAGCGGGTGGAGACCATCTACGATAAGGT
GAAGAACAACAATAGGCTATTCTCATGGTATTTTGAGACGGCGGAGGCCA
CCATTTCGGCCGCCTACGAAACCATCCAGCCGGCGGTCAAGCTCTTCGAG
CCATCCATTCAGCGCCTGGACAACGTGATGTGCAAAAGCCTGGACATTCT
GGAGCAGCGCATACCACTGGTCTATCTGCCGCCCGAAATGATGTACTGGA
ACACCAAGGAGTACATGTCCGATCACCTGGTGCGTCCGGTTCTGAAACGC
GCCGATTCTGTCAAGCAAATCGGTAATGCTGTCCTCGAGAGTCCACTTAC
CACTTATGCAGCCGAGCGCATTGATGGCGCTTTCACAGTCGGCGATAAGT
TCGTGGACAAGTACCTGGTGCCCATCCAAACAGATCAGGATCAGACCGAT
GGCCCACAGGAGGATGATAACGAGGCCGTGCCGGACGAGAGGGGCGCCAT
CAAGGCGATCCATCATGGTCAACGCTTCTCCCGCAAACTGAAGCGCCGCC
TTACCCAAAGAACCATCGCAGAGGCTCGCGCCCTCAAAAAGCAGAGCAAG
GAGGCGATCCACGTGCTCTTCTATGCCGCAGAATTGATTGCCACCGATCC
CAAGCAGGCCGTTCAAAAGGCCAAGGAACTGTGGGTCTATCTCAGTGCAG
ATGAACCCGAAAATCAAGCGAGGCCCGCCACTCTGGAGCAGTTGATTGTG
CTACTGACCCGCGAATCGGCTAGGCGTGTGGTTCATCTAGTGAACTTCAG
TGCTCATGTGGCAGCCAACATACCCAGAAACCTGGCGCACACGACAACAG
AGTTGCCCACCATATTATCTATATCACCACCGCATCATCACATCTCACGG
CTGGACAGGTAAACCATCTCCAAGAGAGCTGATCTCTTTTCAGCGCATGC
TGCGTCTATGTAGCTCAAGGCTGACATGCCTACCTGGAGCGCGTGCAGCT
TTCTATCGACGCATGGAGCGGAAGGTACGGCAGGAATGGCCGCAATCACT
CAGGCTATCGCGGAGAGAGCGGAATCGATACTATTCGAGTGCACTTAATA
ATACTTGCTCACT
FMO04895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-1-RD | 1432 | CG10374-RD | 76..1212 | 38..1146 | 4995 | 97.2 | Plus |
| Lsd-1-RC | 1813 | CG10374-RC | 457..1593 | 38..1146 | 4995 | 97.2 | Plus |
| Lsd-1-RB | 1501 | CG10374-RB | 148..1281 | 41..1146 | 4980 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23764385..23764684 | 41..340 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 23764748..23764960 | 340..552 | 1065 | 100 | Plus |
| 3R | 32079331 | 3R | 23765875..23766066 | 736..927 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 23765511..23765696 | 551..736 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 23766127..23766212 | 925..1007 | 280 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:29 has no hits.
FMO04895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:42 Download gff for
FMO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RC | 452..1571 | 30..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:58 Download gff for
FMO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RC | 452..1571 | 30..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:09 Download gff for
FMO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RC | 452..1571 | 30..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:09 Download gff for
FMO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23764383..23764684 | 37..340 | 99 | -> | Plus |
| 3R | 23764749..23764959 | 341..551 | 100 | -> | Plus |
| 3R | 23765512..23765696 | 552..736 | 100 | -> | Plus |
| 3R | 23765876..23766066 | 737..927 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:42 Download gff for
FMO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19590105..19590406 | 37..340 | 99 | -> | Plus |
| arm_3R | 19590471..19590681 | 341..551 | 100 | -> | Plus |
| arm_3R | 19591234..19591418 | 552..736 | 100 | -> | Plus |
| arm_3R | 19591598..19591788 | 737..927 | 100 | -> | Plus |
