FMO04906.5prime Sequence
623 bp (618 high quality bases) assembled on 2008-08-12
> FMO04906.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCGAGGAAAAC
AATAGCCCCACAACCGATAATTCGCTGTGGACACTTCAGGGTCGTCAAAG
AGCGAGTCCCGCCCAAAGGTTGCACAATCTCACGTCCGCCGGCTCATCGA
CCTCATCCTCCGGCCTTCCGTTACCGCAGAATATCTTCACAAATCCAGCT
ATCCAGCCGTCCAGCGTTATAAATCTCAACCACTCCACCGACGTGGTAAT
CGGTCCCATGACCCAATACCAGGGACCGGTATCCATATACTATATGGATT
ATATGGAGGCACACGCCATGCAAACGGCTGCAGGAATCAACAGCAACAAT
GCCAATGGTAATGGCAACGCCAATCGAAGTCGTGATAAGTCGCCATCTAG
GCGGGTCACTCGGAACACCATCCTGCTGATCACGCTGATCCTGTTGGTCC
TGGCCACCGGATTGATTGTGCTCTACGTGGAACTCAATCGACCCAAGCCC
GAGTTGCCCAGTAATAAAGCCATCTATTTTGGCAACAACTACGACCACCA
AACGGCAAGCTTTCTAGCCTTCGTTGCGGCGGCCGGAATGTTATATATAA
ACAACAGATGAATGCTACGCTAT
FMO04906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LA-RE | 1698 | CG32042-RE | 125..643 | 36..554 | 2595 | 100 | Plus |
| PGRP-LA-RD | 1286 | CG32042-RD | 125..643 | 36..554 | 2595 | 100 | Plus |
| PGRP-LA-RG | 945 | CG32042-RG | 70..290 | 334..554 | 1105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9334630..9334928 | 36..334 | 1495 | 100 | Plus |
| 3L | 28110227 | 3L | 9336710..9336932 | 332..554 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:34:57 has no hits.
FMO04906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:59 Download gff for
FMO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LA-RD | 118..647 | 26..558 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:13:09 Download gff for
FMO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LA-RE | 118..643 | 26..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:02 Download gff for
FMO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LA-RD | 118..647 | 26..558 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:02 Download gff for
FMO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9334621..9334927 | 23..333 | 98 | -> | Plus |
| 3L | 9336712..9336932 | 334..554 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:59 Download gff for
FMO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9327721..9328027 | 23..333 | 98 | -> | Plus |
| arm_3L | 9329812..9330032 | 334..554 | 100 | == | Plus |
