FMO04908.5prime Sequence
1225 bp (967 high quality bases) assembled on 2008-08-12
> FMO04908.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCATTGCCG
ATAAACGCGCCTCCTTCGCGCGCCGCGCCGAATCCCTGGTGGAGCGGAAA
TACAATATCAGCACAGAGAAATGCGGGGATCTGACGGTCATAGTGCAGGG
CGACCTGTCACAGCAGGAGAAACGCGCCGTGTTCATAACGGTTCACGACC
TGGGCTGCAACCACAACTCATTCCAGGAGTTCGTGAGCAGTCCCTGCATG
ACGGAGATCAAGGAGCGCTCCTGCTTCATCCACGTGGACGTGCCGGGGCA
CGCGGACAACGCGGAGGCCCTGGCTGACGGCTTTCCGTTTCCCTCGCTCC
AGTCCCTGGGCGAGGACCTGGTCACCGTGCTGGACTACCTGCACGTAAAG
TACGTGATCGGCCTAGGCGAGGGTGCCGGAGCCAATGTCCTGGCCCGCTT
CGGACTGGCCCATCCCAGCCGGGTGCTGGGCCTCATCCTGATCAACGCGA
CTGGCAGCGCCGCCAGTGTAGTGCAGTCCTTCAAGAACAAGTTCATTAGC
TGGAAGAGCGACGAGGTGGCCCAGTCGGCTGAGAGCTTTCTGATGTACCA
CAAATTCGGATATGTTATGGAGCAAATCGTGGGCGAGAATCCGGACAAGG
AGAAGATCGTGGCCGAGTACCAGAAGCGTCTTCACCGATCCCTAAACAAC
AAGAACATCGGTCTCTATGTCAAAGCATTTATGAATCGCAAGGACCTTAC
GCTCAAGGGCTGCAAGGTATGATGTCATCCTGATCACGGGCATGCTCAGC
CCCTGTGCGTCCATGGTCGAGAAGCTCCATCGCGACGTGGAGAAAGAGAG
GGTCACCATTCTGAAGATCGAAGCGGGCTGGCGATGTCTTCGCCGATGCT
CCCGAAAGGTGGCCCAATCCATTCTGCTGTTCTGCAAGGGACAGGGCTGC
TCACGTCGTGGTGATGCCAGCGTGGATCGCGTACTCGTCTTCTCCCGGCT
AGCTCCGGATCGCTGGAGGTGCCAACGGATCCGGGCGCCTGTCCCGCGCA
TCTTCGAATGGAGATTATGACAGCCTACATCCGCGTTCACATCATGATCG
GTGACTGCCAAGATGTAGCTAGCTCCTAACCATTCGTTGGCCTGCGGCAG
GTATGGCATACCAACCTATCTAATCAGATCCGTAGCTAGAATGGGCCATG
ACTAGGCTGGAATCTCCCCATAAAA
FMO04908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 2290 | CG2082-RK | 327..1403 | 37..1104 | 4750 | 96.9 | Plus |
| CG2082-RB | 2280 | CG2082-RB | 317..1393 | 37..1104 | 4750 | 96.9 | Plus |
| CG2082-RL | 2277 | CG2082-RL | 317..1390 | 37..1104 | 4640 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762172..5762500 | 541..213 | 1645 | 100 | Minus |
| 3R | 32079331 | 3R | 5760630..5760792 | 900..736 | 680 | 97 | Minus |
| 3R | 32079331 | 3R | 5760849..5760963 | 735..621 | 560 | 99.1 | Minus |
| 3R | 32079331 | 3R | 5760218..5760367 | 1048..904 | 395 | 92 | Minus |
| 3R | 32079331 | 3R | 5761644..5761719 | 615..540 | 365 | 98.7 | Minus |
| 3R | 32079331 | 3R | 5762557..5762622 | 212..147 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 5776952..5777012 | 97..37 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 5762704..5762756 | 149..97 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:51 has no hits.
FMO04908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:54 Download gff for
FMO04908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 308..1346 | 30..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:41 Download gff for
FMO04908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 310..1348 | 30..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:57 Download gff for
FMO04908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 308..1346 | 30..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:57 Download gff for
FMO04908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5760248..5760371 | 901..1019 | 93 | <- | Minus |
| 3R | 5760630..5760792 | 736..900 | 96 | <- | Minus |
| 3R | 5760849..5760961 | 623..735 | 99 | <- | Minus |
| 3R | 5761636..5761717 | 542..622 | 93 | <- | Minus |
| 3R | 5762172..5762500 | 213..541 | 100 | <- | Minus |
| 3R | 5762557..5762620 | 149..212 | 100 | <- | Minus |
| 3R | 5762705..5762755 | 98..148 | 100 | <- | Minus |
| 3R | 5776952..5777021 | 30..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:54 Download gff for
FMO04908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1586571..1586683 | 623..735 | 99 | <- | Minus |
| arm_3R | 1587358..1587439 | 542..622 | 93 | <- | Minus |
| arm_3R | 1585970..1586093 | 901..1019 | 93 | <- | Minus |
| arm_3R | 1586352..1586514 | 736..900 | 96 | <- | Minus |
| arm_3R | 1587894..1588222 | 213..541 | 100 | <- | Minus |
| arm_3R | 1588279..1588342 | 149..212 | 100 | <- | Minus |
| arm_3R | 1588427..1588477 | 98..148 | 100 | <- | Minus |
| arm_3R | 1602674..1602743 | 30..97 | 95 | | Minus |
