FMO04909.5prime Sequence
1214 bp (1013 high quality bases) assembled on 2008-08-12
> FMO04909.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCACGAGGAT
GATCTGAAGAGTCAGTTGACCATCGCGCGGAACGAGATCAACAATCTCAG
GCAGCAAGTGCGCAACCTGCAGCATGTGCAGCGCAAGGACATTGAGACGA
TAACCCGCCTGCTGCAGGACTTCCGCTGCGAGGGGTGTGCGAACAACAAC
AAAAGCGCCAAGGACAAGGTCGCCGGCGAGAAGCAGGAGCACCAGCACCA
ACAGCAGACGCAGGACCAGCAGACGGGCCAAGGTCAGAGCAATTATACCA
ATGGTGGGCACTGCTTGGGAGAGGACTACGCACACTTTCGGCCCATAGGA
GTGATCCGGACAGCATTCCCAGAGAAGCGGGCCGTGCCGAGGCAGTCAAT
TGTGGGCAGTCGCCTGCGGGGTATCATCCAACTGAACGACGGTGTGTTCA
CCAATCCGGAGCACTCCTTGGAGGGACTAGAGGACTTTTCCCATCTGTGG
CTCATCTATCATTTTCACCGCAACAATTCCCACCCCAAGGCCAAGGTGGC
GCCTCCCCGTCTTGGTGGGGAGCGGGTGGGTGTGTTTTCCACACGATCTC
CACACCGCCCGTGTCCCATTGGTCTCTCGTTGGTGGAGATTGAGAAGATC
GAGAACGCCACCATTAGTTTCTTTGGTACGGACATGGTAGACGGCACACC
CGTGTTGGACATTAAGCCCTACATTCCACACTACGATGCACCATCCTTGA
GCGTTGACTCAGGAAGAACCTCTGTTGGACCGCATGAGAGCAGCCTGGAC
TTCTACGACTCCAGACAGGAGCCTGACGGAGAGGAATCGGACCTGGAACT
GTATGGAGCAGCTGGCTACAGCGGGAACGCGGGCATTGGAGCTGACGCTC
TTCTGCCGCCACCCAGCGCCGTGCGAGTGCCCAACTGGGTGGTGGCCAGC
AATAGACTTAGCGTGACCTTTAACGAGCATGCCGAGGCGCAGTTAATGAG
CTGCAGGTGGAGAAACAGTGCATCGGTGACTCTGGAGGCGGATTCCGCGC
CTCCGTTTACTTGCCCCCAAATATGCTCGCTCATATTTACCCTTCCGCCT
GCGGGGAGTCCGTACTGCAACTTGATGACAGCCGCACGTGCACGTTTTCA
GTCTCGGCATCGAAGTTCACGTTACCGTCCTGGACGTGCACTGCAAGGCC
CTAAGCTTCTGAAC
FMO04909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1468 | CG12822-RB | 134..1202 | 39..1105 | 5005 | 98.2 | Plus |
CG12822-RA | 1522 | CG12822-RA | 134..858 | 39..763 | 3625 | 100 | Plus |
CG18853-RA | 1157 | CG18853-RA | 133..640 | 39..546 | 2540 | 100 | Plus |
CG12822-RA | 1522 | CG12822-RA | 909..1256 | 760..1105 | 1400 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7832700..7833177 | 286..763 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 7829590..7829850 | 286..546 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 7833228..7833540 | 760..1071 | 1255 | 96.2 | Plus |
2R | 25286936 | 2R | 7829343..7829532 | 98..287 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7832453..7832642 | 98..287 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7829194..7829256 | 39..101 | 315 | 100 | Plus |
2R | 25286936 | 2R | 7832304..7832366 | 39..101 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6891 | 88..271 | 164 | 59.3 | Plus |
FMO04909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:14 Download gff for
FMO04909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 126..1178 | 31..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:14:00 Download gff for
FMO04909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 130..1182 | 31..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:20 Download gff for
FMO04909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 126..1178 | 31..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:20 Download gff for
FMO04909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7832299..7832365 | 35..100 | 97 | -> | Plus |
2R | 7832456..7832642 | 101..287 | 100 | -> | Plus |
2R | 7832702..7833176 | 288..762 | 100 | -> | Plus |
2R | 7833231..7833551 | 763..1080 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:14 Download gff for
FMO04909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3719804..3719870 | 35..100 | 97 | -> | Plus |
arm_2R | 3719961..3720147 | 101..287 | 100 | -> | Plus |
arm_2R | 3720207..3720681 | 288..762 | 100 | -> | Plus |
arm_2R | 3720736..3721056 | 763..1080 | 95 | | Plus |