Clone FMO04909 Report

Search the DGRC for FMO04909

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:49
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12822-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04909.5prime Sequence

1214 bp (1013 high quality bases) assembled on 2008-08-12

> FMO04909.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCACGAGGAT
GATCTGAAGAGTCAGTTGACCATCGCGCGGAACGAGATCAACAATCTCAG
GCAGCAAGTGCGCAACCTGCAGCATGTGCAGCGCAAGGACATTGAGACGA
TAACCCGCCTGCTGCAGGACTTCCGCTGCGAGGGGTGTGCGAACAACAAC
AAAAGCGCCAAGGACAAGGTCGCCGGCGAGAAGCAGGAGCACCAGCACCA
ACAGCAGACGCAGGACCAGCAGACGGGCCAAGGTCAGAGCAATTATACCA
ATGGTGGGCACTGCTTGGGAGAGGACTACGCACACTTTCGGCCCATAGGA
GTGATCCGGACAGCATTCCCAGAGAAGCGGGCCGTGCCGAGGCAGTCAAT
TGTGGGCAGTCGCCTGCGGGGTATCATCCAACTGAACGACGGTGTGTTCA
CCAATCCGGAGCACTCCTTGGAGGGACTAGAGGACTTTTCCCATCTGTGG
CTCATCTATCATTTTCACCGCAACAATTCCCACCCCAAGGCCAAGGTGGC
GCCTCCCCGTCTTGGTGGGGAGCGGGTGGGTGTGTTTTCCACACGATCTC
CACACCGCCCGTGTCCCATTGGTCTCTCGTTGGTGGAGATTGAGAAGATC
GAGAACGCCACCATTAGTTTCTTTGGTACGGACATGGTAGACGGCACACC
CGTGTTGGACATTAAGCCCTACATTCCACACTACGATGCACCATCCTTGA
GCGTTGACTCAGGAAGAACCTCTGTTGGACCGCATGAGAGCAGCCTGGAC
TTCTACGACTCCAGACAGGAGCCTGACGGAGAGGAATCGGACCTGGAACT
GTATGGAGCAGCTGGCTACAGCGGGAACGCGGGCATTGGAGCTGACGCTC
TTCTGCCGCCACCCAGCGCCGTGCGAGTGCCCAACTGGGTGGTGGCCAGC
AATAGACTTAGCGTGACCTTTAACGAGCATGCCGAGGCGCAGTTAATGAG
CTGCAGGTGGAGAAACAGTGCATCGGTGACTCTGGAGGCGGATTCCGCGC
CTCCGTTTACTTGCCCCCAAATATGCTCGCTCATATTTACCCTTCCGCCT
GCGGGGAGTCCGTACTGCAACTTGATGACAGCCGCACGTGCACGTTTTCA
GTCTCGGCATCGAAGTTCACGTTACCGTCCTGGACGTGCACTGCAAGGCC
CTAAGCTTCTGAAC

FMO04909.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1468 CG12822-RB 134..1202 39..1105 5005 98.2 Plus
CG12822-RA 1522 CG12822-RA 134..858 39..763 3625 100 Plus
CG18853-RA 1157 CG18853-RA 133..640 39..546 2540 100 Plus
CG12822-RA 1522 CG12822-RA 909..1256 760..1105 1400 94.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7832700..7833177 286..763 2390 100 Plus
2R 25286936 2R 7829590..7829850 286..546 1305 100 Plus
2R 25286936 2R 7833228..7833540 760..1071 1255 96.2 Plus
2R 25286936 2R 7829343..7829532 98..287 950 100 Plus
2R 25286936 2R 7832453..7832642 98..287 950 100 Plus
2R 25286936 2R 7829194..7829256 39..101 315 100 Plus
2R 25286936 2R 7832304..7832366 39..101 315 100 Plus
Blast to na_te.dros performed 2014-11-28 22:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6891 88..271 164 59.3 Plus

FMO04909.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:14 Download gff for FMO04909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 126..1178 31..1080 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:14:00 Download gff for FMO04909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 130..1182 31..1080 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:20 Download gff for FMO04909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 126..1178 31..1080 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:20 Download gff for FMO04909.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7832299..7832365 35..100 97 -> Plus
2R 7832456..7832642 101..287 100 -> Plus
2R 7832702..7833176 288..762 100 -> Plus
2R 7833231..7833551 763..1080 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:14 Download gff for FMO04909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3719804..3719870 35..100 97 -> Plus
arm_2R 3719961..3720147 101..287 100 -> Plus
arm_2R 3720207..3720681 288..762 100 -> Plus
arm_2R 3720736..3721056 763..1080 95   Plus