FMO04911.5prime Sequence
946 bp (719 high quality bases) assembled on 2008-08-12
> FMO04911.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCACAC
TGAACCGCCCTAAATCCCCGCACACGCCCACCGCCATTAAAAAGGGCGAG
AAGGAGGACAGCTTCTGGGACAAGTTCAGCACTTTGGGCCGCAAACGCGG
CACCCGCGAAGTGAAGAAGGTCCAAGAGGAGGGCAAGTACGCCATCGACT
CGCCTGGATCGCCCAGCCAGTATGACATCCCGCCGGAGGACTATGCCCTG
CGCGAGCACGAACAGCGCGCCGTCATCGATCCACAGTCCATCAGTGATCC
CCAGGTGATAAAGCTGCAGCGCATCCTCGTCGACTGGATCAACGACGAGC
TGGCCGAGCAGCGCATAATTGTTCAGCACCTGGAAGAGGACATGTATGAC
GGCCAGGTGCTGCACAAGCTGTGGGAGAAGCTCACCGGCAAGAAGCTGGA
CGTTCCTGAGGTCACCCAGTCAGAGCAGGGCCAGCACGAGAAGCTCAACA
TCGTCCTGAAGGCCGTCAACCATACACTCGGCTTTCACCAAAAGATTCCC
AAGTGGTCGGTGGCCAGCGTGCACTCGAAGAACATTGTGGCCATATTACA
TCTGCTGGTGGCACTGGTGCGTCACTTCCGGGCGCCCGTTCGCCTGCCAG
AGAACGTGTTCGTGACCGTCGTGATTGCGGAGAAGATGCGGCGTGCTGAC
GCGAAAGTCAGAGAGTACTCGGACGACGACTGGCTGCGTGGAAGCGCTCA
ACGTGTCATGGGCGAAGTGCTGTGAGATCTGTCCGTCTGACACACTGCAG
TACTGATACGTTAACGCTCCACGTACTGCGGGGCGTGGTCTGCTCATCTG
CCAGTGCAGCATGTCTATGGATGTCAAGGGATGTAACCGTATCTGCTATG
GAGATTACAGTGCACGTAAGTACACTTCAGCTGTGCGTGTTAGGGT
FMO04911.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| parvin-RB | 1840 | CG32528-RB | 148..809 | 40..699 | 3260 | 99.7 | Plus |
| parvin-RA | 1801 | CG32528-RA | 109..770 | 40..699 | 3260 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19746811..19747082 | 252..523 | 1360 | 100 | Plus |
| X | 23542271 | X | 19747250..19747412 | 524..686 | 815 | 100 | Plus |
| X | 23542271 | X | 19746188..19746309 | 40..161 | 610 | 100 | Plus |
| X | 23542271 | X | 19746640..19746732 | 160..252 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:00 has no hits.
FMO04911.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:36 Download gff for
FMO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| parvin-RA | 126..805 | 33..708 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:07 Download gff for
FMO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32528-RA | 126..805 | 33..708 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:18 Download gff for
FMO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| parvin-RA | 103..782 | 33..708 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:18 Download gff for
FMO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19746642..19746731 | 162..251 | 100 | -> | Plus |
| X | 19746811..19747082 | 252..523 | 100 | -> | Plus |
| X | 19747250..19747439 | 524..708 | 97 | == | Plus |
| X | 19746180..19746309 | 31..161 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:36 Download gff for
FMO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19640213..19640342 | 31..161 | 96 | -> | Plus |
| arm_X | 19640675..19640764 | 162..251 | 100 | -> | Plus |
| arm_X | 19640844..19641115 | 252..523 | 100 | -> | Plus |
| arm_X | 19641283..19641472 | 524..708 | 97 | == | Plus |
