FMO04912.5prime Sequence
1082 bp (986 high quality bases) assembled on 2008-08-12
> FMO04912.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTCGGC
ATTTGGAAAACTTCTTTACCAACAGAGTACGGCGACAACTGCAAGTGGCT
GAACAAATGACCACCGCCGCCTCCACATCGCAGCATGCGACATCGTCCTC
CACAATGATGGCGGGCTCTGGATCCTTGGCGACCTCGTCGTCCGCCGCTG
CCCCCACAACCACGCCCAGCAGCTCGGCCGTTCGCGCCCTGGCCATGGAG
TACAAGTCGCTGCAGGAAGAGCCGGTGGAGGGATTCCGCGTCAAGCTGAT
CAACGACGACAATCTGTTCGAATGGGAGGTGGCAATCTTCGGGCCACCGG
ACACCCTCTACCAGGGCGGCTACTTCAAGGCGCACATGAAGTTCCCGCAC
GACTATCCATACTCACCGCCATCCATACGCTTCCTGACGAAGGTCTGGCA
TCCGAATGTTTACGAGAACGGTGATCTGTGCATATCCATACTACATCCGC
CGGTGGATGATCCGCAGAGTGGCGAGCTGCCCTGCGAACGCTGGAATCCC
ACGCAGAATGTGCGCACCATCCTGCTGTCGGTCATATCGCTGCTCAATGA
GCCGAACACATTCTCGCCGGCCAACGTGGACGCCTCGGTCATGTACCGCC
GATGGCGGGACTCACAGGGTAAGGACAATGAGTATCCAAACATCATACGA
AAACAGGCACTGGCCGCCAATGCCGAGGCCAAGCGGGAGGGCATTGTGGT
TCCGATGACCCTGGTGGACTACTGCCTGAAGCCCACGCGCAAGCCCACAA
CGGAGTCTGGCCTGGATGCCAACTTCTACGATGATGATATCGATCTGGAG
ACGGAGATGATCTGCCATCTGATGATGACTTCGATGAGGACGACGACGAT
GATGAGGACGAGGATGAAGATGAGGACAGTGCCCCGGCGCCGATTAGCAA
AAATAATGGAGGCAGCAGTAAGTGCAAGAACAACGGGCTGGTAGAGAGGC
GGCCGCCGCCGGACCGACGATGCCGATTCCGCTGATGAACGCGGCAGGGC
GAAACACACCAGCTTTTCTAGAACATTCGTGG
FMO04912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7656-RD | 1410 | CG7656-RD | 234..1252 | 38..1052 | 4875 | 98.8 | Plus |
| CG7656-RF | 2027 | CG7656-RF | 234..1246 | 38..1052 | 4775 | 98.2 | Plus |
| CG7656-RE | 1234 | CG7656-RE | 118..1102 | 72..1052 | 4690 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15587004..15587634 | 668..38 | 3155 | 100 | Minus |
| 3L | 28110227 | 3L | 15586219..15586603 | 1046..665 | 1655 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:45:46 has no hits.
FMO04912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:00 Download gff for
FMO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 229..1258 | 31..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:09 Download gff for
FMO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RC | 27..1056 | 31..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:13 Download gff for
FMO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 229..1258 | 31..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:13 Download gff for
FMO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15586206..15586600 | 668..1059 | 96 | <- | Minus |
| 3L | 15587005..15587631 | 41..667 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:00 Download gff for
FMO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15579306..15579700 | 668..1059 | 96 | <- | Minus |
| arm_3L | 15580105..15580731 | 41..667 | 100 | -> | Minus |
