FMO04913.5prime Sequence
1021 bp (754 high quality bases) assembled on 2008-08-12
> FMO04913.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGACGAGGA
ATCTGTTGGCCATCCTTCTTTTGGCCAGCATCTGCATGACCCAGGCATAT
CCGGCTTTGTTGCCCTACATCTACAATCCTTCCAAGCGCAGCGGTGATAC
GGCTTTCCCCCAAATCGAGGACGATGTAAGTGAACTGGACCAGCTGCGGA
ATGAACCGGGAGCGGTGATGGCCAAGCGTCAGCACGATGGAAGTACAGCC
CGCACCACCACTACCACCAAGGAGAGTGTCGAGGAGGTCGCCGCTGTTCC
CGAGCCAGGTGCACAACCAAATGCGAATATTATGCCCGACTTGGAGAGGC
AGTTGGAGGTGGCGACGCCTCTGATTTCCACCACTACAACCACTAGCACG
TCGGCCACCACCACTACGGCGACGTCCAAGGAGGAGGGCGAAAGGTCCCA
GCTGGAGGAGCCGAAGACGCAGATCAAAACCGTAGTGGAGCCGACGGCCC
ATGCGAAGAACGCCAAAAGCTTCTTGCGTAGTCCGAATGGTCAGTACTCT
TCGTTCGACATGGCCCAGTATATTTTTTGGACTGGAGATGAAACAGCTGT
GGTAAAAGCCGTGGAAGAACTGGTTGAGGGGAAAGTGATCACTCGGGAGA
GCGCCCTGAAGTTCCTGCAGGACATTCGGCTGGGAATAGAGTTCTGCGCA
GACATCCAAGCCACTACCCTCCTCCCCCCTCACAACGCCACAACTCGTCA
CGCACGCGAGCGGCCAATCATCTCGACATGAGGTTTGCTTGTTTGTGGAT
CTGTTATCGTTGATGGCAGGCTGAAAAAAAAAGTCTGTTTTGTATTCTTT
TTTTTGCAGTATGAGTTATTGTCTTCTTCATATTATATTATTATTGAGAC
GTTTTTTTTTTTTTTTTTACTTGTTATTGTTATTCGTTTGTTTTTCTTTT
GTTTTATGTGTTTTATTTCTGTATTATCGTGTTTGTTTCGTTTTGTCGAT
TCGTTGTGTTTGGTGTTATTT
FMO04913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..764 | 37..695 | 3295 | 100 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..769 | 37..695 | 3295 | 100 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 106..577 | 37..508 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 508..126 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 637..507 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 125..37 | 445 | 100 | Minus |
| 3R | 32079331 | 3R | 13374723..13374781 | 695..637 | 295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1104..1248 | 838..978 | 220 | 65.3 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1095..1233 | 843..977 | 215 | 66.4 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1073..1218 | 838..977 | 201 | 63.7 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1118..1246 | 838..968 | 198 | 65.2 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1065..1228 | 858..1020 | 194 | 62.3 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1058..1209 | 866..1021 | 184 | 60.3 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1146..1247 | 838..944 | 180 | 67.3 | Plus |
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 2..64 | 944..882 | 117 | 65.1 | Minus |
FMO04913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:08 Download gff for
FMO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..780 | 30..707 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:35 Download gff for
FMO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 1021..1218 | 509..707 | 97 | | Plus |
| CG9813-RA | 150..624 | 30..508 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:30 Download gff for
FMO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..780 | 30..707 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:30 Download gff for
FMO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13374712..13374780 | 638..707 | 92 | <- | Minus |
| 3R | 13377533..13377661 | 509..637 | 100 | <- | Minus |
| 3R | 13378402..13378784 | 126..508 | 100 | <- | Minus |
| 3R | 13379003..13379094 | 30..125 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:08 Download gff for
FMO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9200434..9200502 | 638..707 | 92 | <- | Minus |
| arm_3R | 9203255..9203383 | 509..637 | 100 | <- | Minus |
| arm_3R | 9204124..9204506 | 126..508 | 100 | <- | Minus |
| arm_3R | 9204725..9204816 | 30..125 | 95 | | Minus |
