FMO04915.5prime Sequence
1291 bp (954 high quality bases) assembled on 2008-08-12
> FMO04915.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACACGGACGAC
AACTCAAGTGGCACTATTACCGGCAGTGATCTTGGCCAGCGTTATCGGCA
TGCAGGCGACTTAACTGGCGAAGCCCCAACCAGACCCTTCGCCGAGATCA
GCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGTACGGTCCGCAG
AACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGATAATGCGGGAAC
CTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGCATTCCTCGCGA
TCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTGATGGCTGCTAC
TACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATCATGAAGCAGTA
CAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTCGTCCATTATTT
GCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACATGATCATTGGG
ATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCGGTTATTAGGAC
CATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGAAAGGAACCGGA
GTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTATTGAGAAGGTC
TATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGCAAGCATTTAAT
GGCTCGCAACATCGACAAGTCGGAGAAGTACCCGGACAAGTACTTCTTCT
GCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCGGGTCCCAGGAG
CTGTGTGTGGAAATGCCCAATCCGATTACATGTCCTTACTTGTTCATCAA
GGCCCGCCCAGTCCTCGTATTTTGAGGACAAGAAATACTACGACGAGGTG
CTGGATGTGCTCTTTGAAGAAGCCGAACTTTGACTACCTGGAAGTTAATG
GCTCGCACCATGTGCACATGAACGATCCAGAGGCCATCATTGCACCAGGT
CAACAAATTTTATTCAGCGCCTTCGGAACGGGCGCAGCGGCTGCATTCCC
GCCAGAAAGGCAAAGGTGGCGAAAGGAAACAAGCTTGCAAAGCTTTTCTA
AACTCATTCGTTTGGCCGCGCGGGCCAAGGTAAATGGTCCTATAATCTAC
AAAAGTAATGGTATTCATTTTTTTCACAACTATAGCCTAAAGAGAAATCT
CTTGCCTATGAACATTAGGTCTTTGAACTTCCCCCATTCGATCGAGCCCG
GGCGGCGAACACGCGACAGGCGTTTCTGGTATAAACAAACA
FMO04915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11309-RF | 2125 | CG11309-RF | 259..1302 | 36..1086 | 4780 | 97.5 | Plus |
| CG11309-RE | 1206 | CG11309-RE | 35..1078 | 36..1086 | 4780 | 97.5 | Plus |
| CG11309-RD | 1536 | CG11309-RD | 161..1204 | 36..1086 | 4780 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21302608..21303549 | 1086..138 | 4095 | 97.2 | Minus |
| 3L | 28110227 | 3L | 21303910..21304011 | 137..36 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 21305088..21305198 | 147..257 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:01:34 has no hits.
FMO04915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:09 Download gff for
FMO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RC | 128..1174 | 33..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:39 Download gff for
FMO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RB | 251..1297 | 33..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:32 Download gff for
FMO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RD | 158..1204 | 33..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:32 Download gff for
FMO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21302608..21303549 | 138..1086 | 97 | <- | Minus |
| 3L | 21303910..21304014 | 33..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:09 Download gff for
FMO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21295708..21296649 | 138..1086 | 97 | <- | Minus |
| arm_3L | 21297010..21297114 | 33..137 | 99 | | Minus |
