FMO04917.5prime Sequence
711 bp (675 high quality bases) assembled on 2008-08-12
> FMO04917.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCGAGGAGTT
CCTGGAGAAGTTGCCAGAAATCGACACACGCTACGAGGATATTGTGCCCA
TGGAACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATG
CAGCGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGC
GGACGAGGAAATCAGCGATAAGGCATCAACATGCGGAAAATTGCTAATAT
TTCTTTCCGTGGCTCTTGTGATAATGACGCTACCCTTCAGTCTCTTTGTT
TGCTTTAAGGTGGTGCAGGAGTACGAGCGCGCGGTTATCTTCCGTTTGGG
TCGTCTTATGCAGGGCGGTGCCAAGGGCCCAGGTATCTTCTTCATCCTGC
CCTGCATTGACTCCTATGCCCGTGTGGACTTGCGTACTCGCACATACGAT
GTGCCACCGCAGGAGGTTCTCACAAAGGATAGCGTTACGGTTTCGGTGGA
TGCAGTGGTTTACTATCGGGTATCAAATGCGACCGTCTCTATCGCGAACG
TGGAGAATGCTCACCATTCGACCAGGCTACTGGCACAGACTACTCTACGA
AACACAATGGGAACTCGGCATTTGCATGAGATACTCAGCAAGCGTATGAC
GATTTCCGGCACAATGCAGGTTCACCCCCGCTAGCGGCCGCGGACGCACA
AGCGTGTTGGT
FMO04917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42540-RC | 3863 | CG42540-RC | 730..1367 | 37..674 | 3175 | 99.8 | Plus |
| CG42540-RH | 3851 | CG42540-RH | 730..1355 | 37..674 | 2985 | 98 | Plus |
| CG42540-RK | 3887 | CG42540-RK | 730..1391 | 37..674 | 2855 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4586578..4586785 | 464..671 | 1025 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4578759..4578871 | 199..311 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 4563795..4563896 | 86..187 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 4580074..4580161 | 380..467 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 4579445..4579521 | 308..384 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 4558002..4558053 | 37..88 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:56 has no hits.
FMO04917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:55 Download gff for
FMO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RC | 730..1367 | 37..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:39 Download gff for
FMO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32245-RA | 728..1365 | 37..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:14 Download gff for
FMO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RC | 730..1367 | 37..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:14 Download gff for
FMO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4586580..4586785 | 466..671 | 99 | | Plus |
| 3L | 4558002..4558052 | 37..87 | 100 | -> | Plus |
| 3L | 4563797..4563904 | 88..199 | 93 | -> | Plus |
| 3L | 4578760..4578869 | 200..309 | 100 | -> | Plus |
| 3L | 4579447..4579519 | 310..382 | 100 | -> | Plus |
| 3L | 4580077..4580159 | 383..465 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:55 Download gff for
FMO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4558002..4558052 | 37..87 | 100 | -> | Plus |
| arm_3L | 4563797..4563904 | 88..199 | 93 | -> | Plus |
| arm_3L | 4578760..4578869 | 200..309 | 100 | -> | Plus |
| arm_3L | 4579447..4579519 | 310..382 | 100 | -> | Plus |
| arm_3L | 4580077..4580159 | 383..465 | 100 | -> | Plus |
| arm_3L | 4586580..4586785 | 466..671 | 99 | | Plus |
