FMO04920.5prime Sequence
836 bp (670 high quality bases) assembled on 2008-08-12
> FMO04920.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGTCCAGTGAAC
GAGTGGCCAAAGTGGTGCTGGTGGACATCGAGGGCACCACCACTTCGATT
AGCTTTGTGCACGATGTCCTGTTTCCCTACGCCAAGCAGAATGTGGAAAA
GTTCCTGAGGGATTCGTGGGAAGAAGATGATATAAAGCGTATTGTCCAGG
ATCTACAGCAAGTGCCCCAGTATGCGGACTACAAGGCCCTGTTAAGTGGT
CCACCTACGGAAGTGGATGTAGATCTGATTGCAGGCTTTGTGCGCTATTT
AATTGATCAGGATCTGAAGGTCACGCCAATGAAAACGCTGCAGGGCTTGA
TTTGGGCGCAGGGCTACGCTAATGGAGAGCTGAAGGGCCATGTATACGAA
GACGTCCCTGCAGCTTTTGAGGCTTGGCGTGCTGCTGGCCTCCAGATTGC
AGTCTACTCCAGCGGCAGTGTGGCTGCCCAAAAGCTGATATTCGGTCATA
GTTTGGCCGGGAACCTGCAGCCGTACTTGAGTGCTTATTTCGACACCCAT
GTGGGCCACAAACAGGAACAGCAGTCCTATAAAAACATTGCCAAGCAATT
GAAGGAGGACCCGAAGCAGATACTCTTTCTCATGGAATCCAGAGAGGGCG
CGTCGTGGGGCTGAGCTATTAGGTGACCGCACAACAATGTCATACGTACT
CACATCGAACATATCATCTGCGCGAGAAAAAACAGAGTCACGTAAGTTAG
AACCTATAAACTGAGTAGTTACAGACAGTGTATTGTGGTGTGGCATTGTT
TTTTTATAATAGGGTACGTAATAGTGCTATGTGTGT
FMO04920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12173-RA | 867 | CG12173-RA | 79..680 | 35..636 | 2995 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5256248..5256603 | 390..35 | 1780 | 100 | Minus |
| 3R | 32079331 | 3R | 5255693..5255938 | 636..391 | 1215 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:16 has no hits.
FMO04920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:02 Download gff for
FMO04920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12173-RA | 70..691 | 25..646 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:13:18 Download gff for
FMO04920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12173-RA | 40..661 | 25..646 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:25 Download gff for
FMO04920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12173-RA | 70..691 | 25..646 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:25 Download gff for
FMO04920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5256248..5256612 | 25..390 | 98 | | Minus |
| 3R | 5255681..5255938 | 391..647 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:02 Download gff for
FMO04920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1081403..1081660 | 391..647 | 98 | <- | Minus |
| arm_3R | 1081970..1082334 | 25..390 | 98 | | Minus |
