FMO04936.5prime Sequence
439 bp (439 high quality bases) assembled on 2008-08-12
> FMO04936.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATTCTCTGG
CCAGGATCGGGGGTTTTGTGTGCCAGTCCGTGCAAATAGCCGGCTGCGGG
CTGCAGCAGGTGCGCACAAAGTATGCCGATTGGAAGATGATTCGCGACGT
AAAGCGGCGCAAGTGCGTCAAGGAGAACGCCGTGGAGCGGCTGCGAGTCA
ACTCGCTGCGCAAGAACGACATCCTGCCGCCGGAGCTACGCGAGGTAGCC
GACGCCGAGATCGCTGCTTTTCCTCGGGACTCATCGCTCGTCCGGGTGAG
GGAACGCTGCGCGCTTACGTCACGTCCGCGCGGAGTTGTCCACAAGTACA
GGCTCAGTCGAATCGTGTGGCGCCACCTCGCCGACTACAATAAGCTGTCC
GGCGTCCAGCGCGCCATGTGGGCAAGCTTTCTAGACCAT
FMO04936.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS14-RB | 797 | CG32531-RB | 361..746 | 36..421 | 1930 | 100 | Plus |
| mRpS14-RA | 476 | CG32531-RA | 40..425 | 36..421 | 1930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19479433..19479754 | 421..100 | 1610 | 100 | Minus |
| X | 23542271 | X | 19479814..19479878 | 100..36 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:07 has no hits.
FMO04936.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:28 Download gff for
FMO04936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS14-RA | 35..429 | 30..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:41 Download gff for
FMO04936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS14-RA | 1..387 | 38..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:54 Download gff for
FMO04936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS14-RA | 35..429 | 30..427 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:54 Download gff for
FMO04936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19479429..19479753 | 101..427 | 99 | <- | Minus |
| X | 19479814..19479883 | 30..100 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:28 Download gff for
FMO04936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19373462..19373786 | 101..427 | 99 | <- | Minus |
| arm_X | 19373847..19373916 | 30..100 | 95 | | Minus |
