Clone FMO04938 Report

Search the DGRC for FMO04938

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:49
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPbprp5-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04938.5prime Sequence

483 bp (483 high quality bases) assembled on 2008-08-12

> FMO04938.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGTCTACTCC
AATCATTCTGGTGGCAATCGTCCTTCTCGGCGCCGCACTGGTGCGAGCCT
TTGACGAGAAGGAGGCCCTGGCCAAGCTGATGGAGTCAGCCGAGAGCTGC
ATGCCGGAAGTGGGGGCCACCGATGCCGATCTGCAGGAAATGGTCAAGAA
GCAGCCAGCCAGCACATATGCCGGCAAGTGCCTGCGCGCCTGCGTGATGA
AGAACATCGGAATTCTGGACGCCAACGGAAAACTGGACACGGAGGCAGGT
CACGAGAAGGCCAAGCAGTACACGGGCAACGATCCGGCCAAGCTAAAGAT
TGCCCTGGAGATCGGCGACACCTGTGCCGCCATCACTGTGCCGGATGATC
ACTGCGAGGCCGCCGAAGCCTATGGCACTTGCTTCAGGGGCGAGGCCAAG
AAACATGGACTCTTGGCAAGCTTTCTAGACCAT

FMO04938.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Obp28a-RA 575 CG6641-RA 36..465 36..465 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7496901..7497330 465..36 2150 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:01:37 has no hits.

FMO04938.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:11 Download gff for FMO04938.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp28a-RA 31..473 30..474 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:44 Download gff for FMO04938.5prime
Subject Subject Range Query Range Percent Splice Strand
Pbprp5-RA 26..468 30..474 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:33 Download gff for FMO04938.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp28a-RA 31..473 30..474 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:33 Download gff for FMO04938.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7496893..7497335 30..474 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:11 Download gff for FMO04938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7496893..7497335 30..474 98   Minus