FMO04940.5prime Sequence
325 bp (325 high quality bases) assembled on 2008-08-12
> FMO04940.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAACTACTTCG
CGGTGATCTGCATTTTCTCCTGCATTTGCCTTTGGCAATTTAGCGATGCT
GCCCCCTTTATAAGCGTTCAGTCTAGTTCACAATCAAGATCCCAGAAAGT
GATGAATGGCATGTTGAGAACCCTATACGACTACAGTGTTCAGGATAGTG
TGAACGATGCGACTGGGCATTTGATACAAACTCACAAAGCAGACTTCAAC
TCGGATGTCATGAGTCCTGATGAAATAGAGAGTGTGCGCCAGCAACTGAA
CATGGCAGCAAGCTTTCTAGACCAT
FMO04940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Ab-RC | 408 | CG9024-RC | 26..295 | 38..307 | 1350 | 100 | Plus |
| Acp26Ab-RB | 504 | CG9024-RB | 26..295 | 38..307 | 1350 | 100 | Plus |
| Acp26Ab-RA | 453 | CG9024-RA | 26..295 | 38..307 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5892507..5892745 | 307..69 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:44 has no hits.
FMO04940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:08 Download gff for
FMO04940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Ab-RA | 20..301 | 33..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:13:30 Download gff for
FMO04940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Ab-RB | 20..301 | 33..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:06 Download gff for
FMO04940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Ab-RA | 20..301 | 33..316 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:06 Download gff for
FMO04940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5892504..5892745 | 69..312 | 98 | <- | Minus |
| 2L | 5892807..5892843 | 33..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:08 Download gff for
FMO04940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5892504..5892745 | 69..312 | 98 | <- | Minus |
| arm_2L | 5892807..5892843 | 33..68 | 94 | | Minus |
