FMO04941.5prime Sequence
410 bp (410 high quality bases) assembled on 2008-08-12
> FMO04941.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTGCATCGCC
ATCGTCTCCACCATCTGCCTGCTGGCCGCTTTCGTTGCCGCCGATAAGGA
GGATAAGATGCTCGGCTCCTCGTACGGTGGTGGCTACGGCAAGCCCGCCG
CTGCTCCGGCTCCATCCTACTCCGCTCCGGCTGCCGCTCCCCAGGCCTAC
GCCGCCCCAGCTGCTCCATCCTACGCCGCCGCTCCGGTCTCGATCCCGGC
TCCTCCTTGCCCCAAGAACTACCTGTTCAGCTGCCAGCCCAACCTGGCCC
CAGTGCCATGCAGCGCCCCAGCTCCCAGCTATGGATCCGCCGGTGCCTAC
TCGCAGTACGCCCCCGTCTACGCTCCTCAGCCCATCCAGTGGGCAAGCTT
TCTAGACCAT
FMO04941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 491 | CG9271-RA | 45..403 | 34..392 | 1795 | 100 | Plus |
Vm26Aa-RB | 745 | CG9048-RB | 295..404 | 243..352 | 445 | 93.6 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 295..404 | 243..352 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13411229..13411587 | 392..34 | 1795 | 100 | Minus |
2L | 23513712 | 2L | 5959937..5960046 | 352..243 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957403..5957534 | 229..360 | 300 | 81.8 | Plus |
2L | 23513712 | 2L | 11171466..11171524 | 303..245 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:46 has no hits.
FMO04941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:02 Download gff for
FMO04941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 24..388 | 28..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:46 Download gff for
FMO04941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..403 | 28..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:05 Download gff for
FMO04941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..403 | 28..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:05 Download gff for
FMO04941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13411229..13411593 | 28..392 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:02 Download gff for
FMO04941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13411229..13411593 | 28..392 | 99 | | Minus |