Clone FMO04941 Report

Search the DGRC for FMO04941

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:49
Well:41
Vector:pMK33-CFH-BD
Associated Gene/TranscriptVm34Ca-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04941.5prime Sequence

410 bp (410 high quality bases) assembled on 2008-08-12

> FMO04941.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTGCATCGCC
ATCGTCTCCACCATCTGCCTGCTGGCCGCTTTCGTTGCCGCCGATAAGGA
GGATAAGATGCTCGGCTCCTCGTACGGTGGTGGCTACGGCAAGCCCGCCG
CTGCTCCGGCTCCATCCTACTCCGCTCCGGCTGCCGCTCCCCAGGCCTAC
GCCGCCCCAGCTGCTCCATCCTACGCCGCCGCTCCGGTCTCGATCCCGGC
TCCTCCTTGCCCCAAGAACTACCTGTTCAGCTGCCAGCCCAACCTGGCCC
CAGTGCCATGCAGCGCCCCAGCTCCCAGCTATGGATCCGCCGGTGCCTAC
TCGCAGTACGCCCCCGTCTACGCTCCTCAGCCCATCCAGTGGGCAAGCTT
TCTAGACCAT

FMO04941.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 491 CG9271-RA 45..403 34..392 1795 100 Plus
Vm26Aa-RB 745 CG9048-RB 295..404 243..352 445 93.6 Plus
Vm26Aa-RA 641 CG9048-RA 295..404 243..352 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13411229..13411587 392..34 1795 100 Minus
2L 23513712 2L 5959937..5960046 352..243 445 93.6 Minus
2L 23513712 2L 5957403..5957534 229..360 300 81.8 Plus
2L 23513712 2L 11171466..11171524 303..245 205 89.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:46:46 has no hits.

FMO04941.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:02 Download gff for FMO04941.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 24..388 28..392 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:46 Download gff for FMO04941.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..403 28..392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:05 Download gff for FMO04941.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..403 28..392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:05 Download gff for FMO04941.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13411229..13411593 28..392 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:02 Download gff for FMO04941.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13411229..13411593 28..392 99   Minus