FMO04942.5prime Sequence
623 bp (623 high quality bases) assembled on 2008-08-12
> FMO04942.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACACATCAACG
GCAATTAGTTTTGTGGCCGCTTTAGTGCTTTGCTGCTTAGCTCTATCCGC
CAATGCCCTGCAGATTGAACCACGCAGCAGTTGGGGTGCGGTGTCTGCTC
GATCGCCTTCTAGGATTTCCGGCGCCGTCGACTATGTGATCATCCATCAT
TCGGACAATCCTAATGGCTGCTCCACATCCGAGCAGTGCAAGCGCATGAT
CAAGAACATTCAGTCGGATCACAAGGGTCGCCGCAATTTCAGCGATATTG
GATATAACTTTATCGTGGCCGGTGATGGCAAGGTGTACGAGGGTCGTGGT
TTCGGGCTCCAGGGATCACACTCCCCCAACTATAATCGCAAGAGCATTGG
CATCGTCTTCATTGGCAACTTCGAACGCAGTGCCCCATCCGCCCAGATGC
TCCAGAACGCCAAGGATCTAATCGAGCTGGCCAAGCAGCGTGGATACCTC
AAGGATAACTACACGCTGTTCGGTCATCGGCAGACCAAGGCCACCTCCTG
CCCAGGTGATGCTCTGTACAACGAGATCAAGACGTGGCCGCACTGGAGGC
AAAACGCAAGCTTTCTAGTCCAT
FMO04942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB1-RA | 623 | CG9681-RA | 7..576 | 36..605 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16727346..16727862 | 605..89 | 2585 | 100 | Minus |
| 3L | 28110227 | 3L | 16727929..16727983 | 90..36 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:40 has no hits.
FMO04942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:59 Download gff for
FMO04942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..584 | 33..611 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:11:58 Download gff for
FMO04942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 36..613 | 36..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:35 Download gff for
FMO04942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..584 | 33..611 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:35 Download gff for
FMO04942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16727340..16727860 | 91..610 | 99 | <- | Minus |
| 3L | 16727929..16727983 | 36..90 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:59 Download gff for
FMO04942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16720440..16720960 | 91..610 | 99 | <- | Minus |
| arm_3L | 16721029..16721083 | 36..90 | 100 | <- | Minus |
