FMO04944.5prime Sequence
344 bp (344 high quality bases) assembled on 2008-08-12
> FMO04944.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACTGCAAGCCC
TTGATTTTGTGCACCTTTGTGGCAGTTGCAATGTGCCTGGTGCATTTTGG
AAATGCATTGCCCGCCATAAGTCATTATACGCACAAGAGATTTGACTCCA
TGGGTGGCATTGATTTTGTTCAGGTGTGCCTTAACAACTGCGTCCAGTGC
AAGACCATGCTGGGAGATTACTTCCAGGGGCAGACCTGTGCCCTTTCCTG
CCTCAAGTTCAAGGGCAAAGCCATCCCGGACTGCGAGGATATAGCCTCCA
TAGCCCCGTTTCTGAATGCGCTCGAGGCAAGCTTTCTAGACCAT
FMO04944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eh-RB | 700 | CG5400-RB | 159..450 | 35..326 | 1460 | 100 | Plus |
| Eh-RA | 704 | CG5400-RA | 163..454 | 35..326 | 1460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17446892..17447054 | 326..164 | 785 | 98.8 | Minus |
| 3R | 32079331 | 3R | 17447351..17447460 | 144..35 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:54:27 has no hits.
FMO04944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:38 Download gff for
FMO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eh-RA | 154..460 | 25..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:11:59 Download gff for
FMO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eh-RA | 824..1130 | 25..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:18 Download gff for
FMO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eh-RA | 154..460 | 25..332 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:18 Download gff for
FMO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17446886..17447044 | 174..332 | 98 | <- | Minus |
| 3R | 17447246..17447274 | 145..173 | 100 | <- | Minus |
| 3R | 17447351..17447469 | 25..144 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:38 Download gff for
FMO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13272608..13272766 | 174..332 | 98 | <- | Minus |
| arm_3R | 13272968..13272996 | 145..173 | 100 | <- | Minus |
| arm_3R | 13273073..13273191 | 25..144 | 96 | | Minus |
