Clone FMO04950 Report

Search the DGRC for FMO04950

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:49
Well:50
Vector:pMK33-CFH-BD
Associated Gene/Transcripte(y)2b-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04950.5prime Sequence

341 bp (341 high quality bases) assembled on 2008-08-12

> FMO04950.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAATAAAC
AAGGAAACGGGAACCGATCCCGATCCTGGATATAAGCCTACGTTACGCAG
TCAAGATAAGGCCGCCCTGAAGGAACTGCTGCACACGCGTCTTGTGGAGT
GCGGATGGCACAAGGACATTAAGGAAATGATACGAAACATCATCATGGAG
CGCGGAGTGGACAATATAAACCGCGACCAACTGGCTGCCCAAATAGTCCC
GCAAGCTCGCGCTTTGGTGCCTGAAGTCGTCAAAAATGAGATGATGCTGC
GCGTGCACGCCGCCCTCGATAAGGCAAGCTTTCTAGACCAT

FMO04950.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2b-RB 662 CG14612-RB 189..474 38..323 1430 100 Plus
e(y)2b-RA 559 CG14612-RA 86..371 38..323 1430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7094263..7094402 116..255 700 100 Plus
3R 32079331 3R 7094123..7094200 38..115 390 100 Plus
3R 32079331 3R 7094471..7094539 255..323 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:46:34 has no hits.

FMO04950.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:57 Download gff for FMO04950.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2b-RA 80..371 34..323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:13:39 Download gff for FMO04950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14612-RA 1..288 39..324 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:59 Download gff for FMO04950.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2b-RA 80..371 34..323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:59 Download gff for FMO04950.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7094117..7094200 34..115 97 -> Plus
3R 7094263..7094401 116..254 100 -> Plus
3R 7094471..7094539 255..323 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:57 Download gff for FMO04950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2919839..2919922 34..115 97 -> Plus
arm_3R 2919985..2920123 116..254 100 -> Plus
arm_3R 2920193..2920261 255..323 100   Plus