Clone FMO04954 Report

Search the DGRC for FMO04954

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:49
Well:54
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG14701-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04954.5prime Sequence

313 bp (313 high quality bases) assembled on 2008-08-12

> FMO04954.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCATCTATC
ACGACGAGGTGGAGATCGAGGACTTCGAGTACGACGAGGAGGAGGAGATG
TACTACTATCCCTGTCCATGCGGCGATCGATTTCAGATCTCCAAGGAGGA
GCTAATCGAGGGCGAGGAGGTGGCCACCTGTCCCAGCTGCTCCCTAGTCA
TCAAGGTCATATACGATCCGGAGATGTTCAAAGCTGAGGAGGATGAAGAA
AGTGCGCTGAACGAGAAGCTCGGCGACCTGAAGCTCGAGAAGAACGCAAG
CTTTCTAGACCAT

FMO04954.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14701-RA 487 CG14701-RA 105..363 37..295 1295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11232016..11232125 37..146 550 100 Plus
3R 32079331 3R 11232192..11232269 144..221 390 100 Plus
3R 32079331 3R 11232340..11232415 220..295 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:46:23 has no hits.

FMO04954.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:52 Download gff for FMO04954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14701-RA 102..366 34..299 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:54 Download gff for FMO04954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14701-RA 1..261 38..299 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:51 Download gff for FMO04954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14701-RA 102..366 34..299 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:51 Download gff for FMO04954.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11232194..11232268 146..220 100 -> Plus
3R 11232341..11232424 221..299 92 -> Plus
3R 11232013..11232124 34..145 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:52 Download gff for FMO04954.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7057735..7057846 34..145 99 -> Plus
arm_3R 7057916..7057990 146..220 100 -> Plus
arm_3R 7058063..7058146 221..299 92 -> Plus