FMO04961.5prime Sequence
275 bp (275 high quality bases) assembled on 2008-08-12
> FMO04961.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATAGAAATA
ACGTGTAACGATCGTCTTGGCAAGAAGGTGCGCGTCAAGTGCAACCCGGA
CGACACGATTGGGGACCTCAAGAAACTAATCGCGGCACAAACGGGCACAA
AGCACGAGAAGATTGTCCTGAAGAAGTGGTACACAATCTTCAAGGACCCG
ATTCGCCTATCTGACTATGAAATTCACGATGGCATGAATCTGGAACTTTA
CTACCAAGCAAGCTTTCTAGACCAT
FMO04961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ubl-RA | 396 | CG3450-RA | 94..312 | 39..257 | 1095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6810201..6810341 | 216..76 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 6810095..6810135 | 257..217 | 205 | 100 | Minus |
| 2R | 25286936 | 2R | 6810397..6810437 | 79..39 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:31 has no hits.
FMO04961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:34 Download gff for
FMO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ubl-RA | 94..319 | 39..264 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:49 Download gff for
FMO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ubl-RA | 78..303 | 39..264 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:07 Download gff for
FMO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ubl-RA | 94..319 | 39..264 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:07 Download gff for
FMO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6810088..6810135 | 217..264 | 93 | <- | Minus |
| 2R | 6810201..6810339 | 78..216 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:34 Download gff for
FMO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2697593..2697640 | 217..264 | 93 | <- | Minus |
| arm_2R | 2697706..2697844 | 78..216 | 100 | <- | Minus |
