FMO04965.5prime Sequence
544 bp (544 high quality bases) assembled on 2008-08-12
> FMO04965.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGTAAGATGC
AAGTTCTAGTTCAGACGAGCGACGGCAAGAAGACGGTTTACGATGTGGAT
CGCTTCGGAACGGTGGCCAACCTGAAGGCACGGATCGGGCGAGCCATGTC
CGTGCCCATGGGCTTCAGTCGGCTGTCCTACAAGGGTCGCGAGCTGTCCA
ATCAGAGCATACTGGAGGATGTGGGCCATAAGTCCATTCTGGATCTCACC
TGGAAGCCGGTCGTCCTGACGCCCAAGCAATTGCGCGAAAAGAAGATTGG
CAAGTTTAGCAAGTTCGGCTATGGCAGGAAAAACGATAGTGGTGAACATA
TGTCTACATTGATCGGCGGTTACCAGCAACGCATAGATCTGGAAAGTGAC
GATGATGAACTGGAGGCACAGGACTTGACTGAACTCGATTTGTTGTCCCT
TAACTCCGATGATTCACTGGTCAACAACCAGACGGAGCTAGAGCCGATTG
CTCCATTGAATTTCTCTGGATCTGATGCAAGCTTTCTAGACCAT
FMO04965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12725-RA | 1025 | CG12725-RA | 150..638 | 38..526 | 2445 | 100 | Plus |
| CG33223-RB | 689 | CG33223-RB | 67..396 | 38..382 | 900 | 85.1 | Plus |
| CG33223-RA | 1114 | CG33223-RA | 492..821 | 38..382 | 900 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13402226..13402714 | 526..38 | 2445 | 100 | Minus |
| X | 23542271 | X | 8465983..8466312 | 382..38 | 810 | 84.2 | Minus |
| X | 23542271 | X | 8457319..8457560 | 276..38 | 800 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:47 has no hits.
FMO04965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:11 Download gff for
FMO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12725-RA | 150..642 | 38..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:52 Download gff for
FMO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12725-RA | 1..492 | 38..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:07 Download gff for
FMO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12725-RA | 150..642 | 38..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:07 Download gff for
FMO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13402222..13402715 | 37..531 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:11 Download gff for
FMO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13296255..13296748 | 37..531 | 99 | <- | Minus |
