FMO04968.5prime Sequence
567 bp (567 high quality bases) assembled on 2008-08-12
> FMO04968.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGGATCC
CAACCGAAAGATAAACCGTCTGGTCGAAAGGGACCTGAACTTCCTGGAGT
CCTGCGAGCTTGAGTTCGCAGACCGCTTCACTGACGACGACCCAGAGTTC
ATGGCGCACTGCAGCAAGCCTGTGCCGGAGCCGCCAATTGTGGAGAACTG
GATGGGAGGTGGCGGAGGAGGAGGCGGCTTCCAGGGCGGAGGAGGCGGTG
GTCATCCCTACCACAATCGCTACAACGGACATCGCAGAGGAGGCGGCGAC
AGGGGCTGGCAGCGACGAGGAGGAGCTGGCTACCACAACAACCAGGACAG
GGGATTCAGGGACAACCGGCGCAACAACAGATACGATCACATCGATCGCC
GGAATCGGTACGAAGGAGGCGGAGGGTCCGGAGGATCTGGAGGCTACAAG
CGCTCCCATGATCATAACCAGAGAAATGATACTCCCAATAACGAACCACC
CATGAAGGTCAGACGCGACTATGGAAACTTTGTGCCTGCATCCAAGGATG
CAAGCTTTCTAGACCAT
FMO04968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13807-RA | 636 | CG13807-RA | 55..564 | 40..549 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2262973..2263294 | 40..361 | 1610 | 100 | Plus |
| 3L | 28110227 | 3L | 2263355..2263543 | 361..549 | 945 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2682..2729 | 307..353 | 111 | 72.9 | Plus |
FMO04968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:50 Download gff for
FMO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13807-RA | 55..569 | 40..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:25 Download gff for
FMO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13807-RA | 1..513 | 40..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:19 Download gff for
FMO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13807-RA | 55..569 | 40..557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:19 Download gff for
FMO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2262973..2263294 | 40..361 | 100 | -> | Plus |
| 3L | 2263356..2263548 | 362..557 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:50 Download gff for
FMO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2262973..2263294 | 40..361 | 100 | -> | Plus |
| arm_3L | 2263356..2263548 | 362..557 | 97 | | Plus |
