FMO04972.5prime Sequence
492 bp (492 high quality bases) assembled on 2008-08-12
> FMO04972.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAGTCACTT
GCCCAAAGGTGGTGCGCTCTTCCTGGTGCTCAATCTTCTCCTGCTTTCGC
AATGGGAGACCGAGTCTAAGCTGCTCACGCGTTGTCAGTTGGCCAAGGAG
CTGTTGCGCCATGACTTTCCCCGCAGTTATCTATCAAATTGGGTTTGCCT
GGTGGAAGCGGAGAGTGGACGCAGTACATCCAAATCTATGCAGCTGCCCA
ATCAGAGCGTCAGCTACGGTCTGTTTCAGATTAACAGCAAAAATTGGTGT
CGCAAAGGTCGTCGTGGCGGAATCTGCAACATCAAATGCGAAGAGTTCCT
TAACGATGAGATCTCGGATGACTCGCGATGTGCCATGCAGATTTTCAACC
GCCACGGATTCCAGGCCTGGCCCGGATGGATGAGCAAATGTCGTGGGCGC
ACGCTGCCCGATGTCTCGCGTTGCGCAAGCTTTCTAGACCAT
FMO04972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11159-RA | 656 | CG11159-RA | 117..555 | 36..474 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20656338..20656493 | 191..36 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 20655857..20655989 | 474..342 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 20656183..20656271 | 279..191 | 445 | 100 | Minus |
| 2R | 25286936 | 2R | 20656067..20656133 | 343..277 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:21 has no hits.
FMO04972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:01 Download gff for
FMO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11159-RA | 109..563 | 29..482 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:13:47 Download gff for
FMO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11159-RA | 1..441 | 37..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:27 Download gff for
FMO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11159-RA | 109..563 | 29..482 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:27 Download gff for
FMO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20655849..20655987 | 344..482 | 97 | <- | Minus |
| 2R | 20656067..20656130 | 280..343 | 100 | <- | Minus |
| 2R | 20656183..20656271 | 191..279 | 100 | <- | Minus |
| 2R | 20656339..20656493 | 36..190 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:01 Download gff for
FMO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16543354..16543492 | 344..482 | 97 | <- | Minus |
| arm_2R | 16543572..16543635 | 280..343 | 100 | <- | Minus |
| arm_2R | 16543688..16543776 | 191..279 | 100 | <- | Minus |
| arm_2R | 16543844..16543998 | 36..190 | 100 | <- | Minus |
