FMO04973.5prime Sequence
850 bp (689 high quality bases) assembled on 2008-08-12
> FMO04973.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCGAACTGCAG
CATATTACCACTCGGATTCGCACACTTTTGCGTATAACCTTTCACCTGTC
CAGCAATTATGACACGTACTCGATTTGGACCTTTTGCCCGATGACCAATT
GGAACCAGCTTAAACCCGTGCTCCAATCCTGCAATCTGTGCCGCGTCGAA
TCATTTCCCATTGTCTTTTGGCTGGTGGTGCTGCTCAGTGTCTTTGGAAC
ATGTTCCAATTGCTATGAACTGATGAAAGTTTGGTCATGTCCCTGCACCA
AATTGGCCATGTGGCGCCAACGGCACTTCTATGTCCTAAAACATTGGACG
CTGCGAAAGGCTCGACTTTTGAGCTTGGCCATAATCCTGATCGCTTGGCT
AATGCTTATTTACGGAATCGTAACGATCTCCCCCTACGCCATGTCGCCAT
GGATTCTGGTGACCAGCATCGTCCTAACGATGGAGTGCTTCCTTTGGTCC
TTCGACGTATTGACCGGCCGTTTGCCGCTCGATCCGCAGACGCTGCTGTC
GCTCGTTTTGCATGTGATCTTCGTCGCGATGGTTTGCTGCGTGAAGAGCG
TTTTCGAGTTGGCGCTCGGCGAGCACGTCGAGCACTCGCTGCGTATCATG
AAGTTCAACTCTTGCCCGGCAGATGCTACTACTACTACTACAACAGACGT
GATGCCAACGGCATAACAGATGAGACACCCTGTAAGACCCTCGTTACGTC
GCTATCTGATAGTATGTCAGTGTGTGTCTTGCTGATGGTGTGGAGTGCTT
TTCTTCTCGTTTTTTATATTTGTTTCTTTCTTTCTTTATCCCCGTGCTTA
FMO04973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12535-RE | 1643 | CG12535-RE | 848..1461 | 36..649 | 3040 | 99.7 | Plus |
| CG12535-RD | 1603 | CG12535-RD | 719..1332 | 36..649 | 3040 | 99.7 | Plus |
| CG12535-RC | 1824 | CG12535-RC | 1029..1642 | 36..649 | 3040 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3393025..3393414 | 425..36 | 1920 | 99.5 | Minus |
| X | 23542271 | X | 3392668..3392892 | 649..425 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:07 has no hits.
FMO04973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:53 Download gff for
FMO04973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12535-RC | 1022..1642 | 28..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:28 Download gff for
FMO04973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12535-RB | 1..614 | 36..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:21 Download gff for
FMO04973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12535-RC | 1022..1642 | 28..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:21 Download gff for
FMO04973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3392668..3392891 | 426..649 | 100 | <- | Minus |
| X | 3393025..3393421 | 28..425 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:53 Download gff for
FMO04973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3287058..3287454 | 28..425 | 98 | | Minus |
| arm_X | 3286701..3286924 | 426..649 | 100 | <- | Minus |
