Clone FMO04975 Report

Search the DGRC for FMO04975

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:49
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13898-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04975.5prime Sequence

507 bp (507 high quality bases) assembled on 2008-08-12

> FMO04975.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAATCACAAGA
CTACATATTGGCGAATGACGATCTTCAAGACATTTGCGAAGCCTTCGAGC
TCTGTGATCCTGAGAAGACTGGAAGAATCAGAGCAGACGATTTGGGAGAA
GTGATGCGCACTCTCGGCCAGAATCACACCGAGTCGGAAATCTACAGATA
TTCCGAGGGACTCGAGGGAGACGTCAACGGGTACATACAACTCACTGATT
TCATCGATTTGATGACCAAAATCTACAGCGCGATGGGCAGCAGTGACTAT
TTGAAGGCAGCATATAATGCCTTCGATTTTGATAAGGACGGTTTGGTAAC
ATATGGCGAGCTACGTCACGTTTTCATCAATCTTGGCGAAAAAATATCCG
ACGAAGAGTTCAATGAAGTGTTTCGTCAGGCTGATGTTGATGGCGATGGC
GTTATTAACTTCCGTGATTTTTGTACAGCCTATAGATCCGCAAGCTTTCT
AGACCAT

FMO04975.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13898-RA 625 CG13898-RA 79..531 37..489 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 803521..803973 489..37 2265 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:46:27 has no hits.

FMO04975.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:14 Download gff for FMO04975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 69..534 27..493 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-12 14:12:06 Download gff for FMO04975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 18..483 27..493 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:35 Download gff for FMO04975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 69..534 27..493 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:35 Download gff for FMO04975.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 803517..803983 27..493 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:14 Download gff for FMO04975.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 803517..803983 27..493 98   Minus