FMO05002.5prime Sequence
368 bp (368 high quality bases) assembled on 2008-08-11
> FMO05002.5prime
TACATTATACGAAGTTATCAGTCGACATGAACATGACCGTGGATCCGCGC
CGCAAGGAGAAGATCAACCGCTACAAGGCGCCCAAGAACCAGGGCCAGAG
CGGCGGCGCCAACGAGGACATGATGCCGGATTACATGAACATTCTGGGCA
TGATTTTCTCCATGTGTGGACTGATGATGAAGCTCAAGTGGTGCGCCTGG
TTTGCGCTGTACTGCTCCTGCATTAGTTTCGCCAGTTCTCGGGCCAGCGA
CGATGCCAAACAGGTGCTCTCCTCCTTTATGTTGAGCGTCAGTGCGGTGG
TGATGTCCTACCTCCAGAATCCCGCTGCCATGACCCCACCATGGGCTTCC
GCAAGCTTTCTAGACCAT
FMO05002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10674-RA | 478 | CG10674-RA | 60..383 | 27..350 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5135843..5136012 | 350..181 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 5136078..5136233 | 182..27 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:44 has no hits.
FMO05002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:25 Download gff for
FMO05002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10674-RA | 60..387 | 27..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:03 Download gff for
FMO05002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10674-RA | 1..327 | 27..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:05 Download gff for
FMO05002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10674-RA | 60..387 | 27..356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:05 Download gff for
FMO05002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5135839..5136010 | 183..356 | 98 | <- | Minus |
| 3L | 5136078..5136233 | 27..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:25 Download gff for
FMO05002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5128939..5129110 | 183..356 | 98 | <- | Minus |
| arm_3L | 5129178..5129333 | 27..182 | 100 | | Minus |
