Clone FMO05004 Report

Search the DGRC for FMO05004

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:50
Well:4
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13314-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05004.5prime Sequence

429 bp (429 high quality bases) assembled on 2008-08-11

> FMO05004.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCCGACCGCCTGCCA
AGTAACGCTGCTCGCTGGATGCCTGCTTCTGGCCATGAGTTCGGTTCGGG
CCCAGTTCTTCTACCACCAGGCGCTGGGTCTGCCGGTTGCGCACGCTTAC
GAACCGGCCAATCCGTACCAGGGATATGCAACAGCCGATGCCCATCCCTC
GGTGGTGCGAAATGCCCAGTGGGAGTCTGAGTTGCCGGCTGAGCTGTCGA
AGAGTGCGCGGTTCTACAATGATCCCGTGATCGCTGCCAATCTGGCCAAG
GAATCACTGCTCACGAAGAAGGAAATGGCAGTGGTACATCGTGAGGCGGA
GAAAATACCGCGCGAACAGGTGTACAAGCTCTTCAAGAACGCCGGCTATC
TGAGTAGCAGAGCAAGCTTTCTAGACCAT

FMO05004.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RA 2669 CG5288-RA 1781..2159 411..33 1895 100 Minus
CG13314-RB 593 CG13314-RB 103..481 33..411 1895 100 Plus
CG13314-RA 789 CG13314-RA 299..677 33..411 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8982722..8983100 33..411 1895 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:15:52 has no hits.

FMO05004.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:49 Download gff for FMO05004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..677 26..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:04 Download gff for FMO05004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 1..381 34..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:46 Download gff for FMO05004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..677 26..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:46 Download gff for FMO05004.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8982714..8983100 26..411 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:49 Download gff for FMO05004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8975814..8976200 26..411 99   Plus