FMO05006.5prime Sequence
405 bp (405 high quality bases) assembled on 2008-08-11
> FMO05006.5prime
ATACATTATACGAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACA
GTTGTCCGCTGGCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGC
GCACCCAGCTTAGGGAATTGATCGGTAGGCAGAACAAAACATACATCGAT
TTGTCCAAGGAGAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAA
TGATATGATGAGCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCA
AGAAGGAAATGCAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGA
GCCGCTAACGTGGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGA
GAGGCTACAGCACGAGGAGTCGCTCATTGGCAGCCAGGCAAGCTTTCTAG
ACCAT
FMO05006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pallidin-RB | 952 | CG14133-RB | 207..567 | 27..387 | 1805 | 100 | Plus |
| Sug-RF | 3349 | CG7334-RF | 3210..3308 | 387..289 | 480 | 99 | Minus |
| Sug-RE | 3343 | CG7334-RE | 3204..3302 | 387..289 | 480 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11690016..11690114 | 387..289 | 480 | 99 | Minus |
| 3L | 28110227 | 3L | 11691040..11691135 | 122..27 | 480 | 100 | Minus |
| 3L | 28110227 | 3L | 11690226..11690313 | 294..207 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 11690897..11690981 | 207..123 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:59 has no hits.
FMO05006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:42 Download gff for
FMO05006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pallidin-RB | 204..567 | 21..387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:06 Download gff for
FMO05006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14133-RA | 1..363 | 28..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:55 Download gff for
FMO05006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pallidin-RB | 204..567 | 21..387 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:55 Download gff for
FMO05006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11690016..11690108 | 295..387 | 100 | <- | Minus |
| 3L | 11690226..11690312 | 208..294 | 100 | <- | Minus |
| 3L | 11690897..11690981 | 123..207 | 100 | <- | Minus |
| 3L | 11691040..11691138 | 21..122 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:42 Download gff for
FMO05006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11683116..11683208 | 295..387 | 100 | <- | Minus |
| arm_3L | 11683326..11683412 | 208..294 | 100 | <- | Minus |
| arm_3L | 11683997..11684081 | 123..207 | 100 | <- | Minus |
| arm_3L | 11684140..11684238 | 21..122 | 97 | | Minus |
