FMO05007.5prime Sequence
367 bp (367 high quality bases) assembled on 2008-08-11
> FMO05007.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGCAACTACTTT
CTCGTCGCCGCAGATACAGGGCCAAATGTGCCAAGAGGAGTGTCCGCAAA
TTCTTACCCGATTTGAAGTGCAAGTCTGTGGAACGCATTAAATGCCAGAT
TAAGGATCTGCTGATCTTAATGGTTCCGTCCAAGGATTTCTATAAGAACT
CGTTGCGGTTCTACAAGCGCTGCACAAAACCAGATCGTCGGGAGTTCCAG
CGTATCAGCATTGGCATTGGCGTAGGATTCCTTATCATGGGCTTGATTGG
ATTCGTCGTTAAGCTGATGCACATACCCATAGTCAACATCATCATGGACG
CAAGCTTTCTAAACCAT
FMO05007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13426-RA | 418 | CG13426-RA | 58..372 | 35..349 | 1575 | 100 | Plus |
| CG8860-RA | 420 | CG8860-RA | 176..308 | 215..347 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20512743..20513006 | 349..86 | 1320 | 100 | Minus |
| 2R | 25286936 | 2R | 20513059..20513112 | 88..35 | 270 | 100 | Minus |
| 2R | 25286936 | 2R | 12179595..12179727 | 347..215 | 200 | 76.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:43 has no hits.
FMO05007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:43 Download gff for
FMO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..372 | 35..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:06 Download gff for
FMO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..372 | 35..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:49 Download gff for
FMO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..372 | 35..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:49 Download gff for
FMO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20512743..20513004 | 88..349 | 100 | <- | Minus |
| 2R | 20513060..20513112 | 35..87 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:43 Download gff for
FMO05007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16400248..16400509 | 88..349 | 100 | <- | Minus |
| arm_2R | 16400565..16400617 | 35..87 | 100 | <- | Minus |
