FMO05008.5prime Sequence
385 bp (385 high quality bases) assembled on 2008-08-11
> FMO05008.5prime
ACATTATACGAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGG
TTATTTACGTTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGG
GGCACCACAAATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCG
GGCAAGGCGCCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACG
AACCGCCTCCACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGAC
AAGCTCGTGGCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACG
TCGTCAGGCTCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCAC
CACCCCAGTTCCTTCTCGCAAGCTTTCTAGACCAT
FMO05008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13428-RA | 482 | CG13428-RA | 48..389 | 26..367 | 1710 | 100 | Plus |
| CG13428-RB | 407 | CG13428-RB | 174..314 | 227..367 | 705 | 100 | Plus |
| CG13428-RB | 407 | CG13428-RB | 48..173 | 26..151 | 630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20540305..20540401 | 122..26 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 20539965..20540040 | 226..151 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 20539605..20539676 | 367..296 | 360 | 100 | Minus |
| 2R | 25286936 | 2R | 20539745..20539813 | 295..227 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:45 has no hits.
FMO05008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:04 Download gff for
FMO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13428-RA | 34..394 | 13..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:48 Download gff for
FMO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13428-RA | 34..394 | 13..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:49 Download gff for
FMO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13428-RA | 34..394 | 13..372 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:49 Download gff for
FMO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20539600..20539676 | 296..372 | 97 | <- | Minus |
| 2R | 20539745..20539813 | 227..295 | 100 | <- | Minus |
| 2R | 20539965..20540039 | 152..226 | 100 | <- | Minus |
| 2R | 20540221..20540250 | 122..151 | 100 | <- | Minus |
| 2R | 20540306..20540395 | 32..121 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:04 Download gff for
FMO05008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16427105..16427181 | 296..372 | 97 | <- | Minus |
| arm_2R | 16427250..16427318 | 227..295 | 100 | <- | Minus |
| arm_2R | 16427470..16427544 | 152..226 | 100 | <- | Minus |
| arm_2R | 16427726..16427755 | 122..151 | 100 | <- | Minus |
| arm_2R | 16427811..16427900 | 32..121 | 100 | <- | Minus |
